Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00493 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTTTCCTCAACTATCCAAGCTAGGAAATTGAGACTCCCAGAAACTTTTGTGAGGTTGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTAGGTTTGAGGAAAGCCGACAATAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTACTAGTATTCAGATACGAGGGAAACTCAGCGTTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTATCAATCGGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAATCGAATCTTTGAAGAAATGGAGGATTATGATATTCCCGAAGCCATTCCTTCCAATCAGTCCATGAATTCCGGTTCCTTGCGGAATAAGCTATTTGGTGACGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCTGAGTATTTATCCACTAGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGATTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGGGTTAAAAAGAGTGGAAGCAAAAAGCGGAAAATCGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGTTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCTTTCTGCAGAGTCGTCTTGCGACCATCCTATCTATATAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTTAGGATGAGAGAAATTGTACTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAAACCCAAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAGCTGATCAGAAATTAA 1239 41.81 MTDFSAFRTGGFKRKMPRPHFHKLVLSSTIQARKLRLPETFVRLIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEIKKSADEVRFQNLGDDAAHRVKKSGSKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMANPNPASMMNPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4919046 4922819 - MELO3C021929.2.1 Cme11g00493 341156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00493 412 PANTHER B3 DOMAIN-CONTAINING 229 410 - -
Cme11g00493 412 PANTHER B3 DOMAIN-CONTAINING 16 167 - -
Cme11g00493 412 CDD B3_DNA 284 379 IPR003340 GO:0003677
Cme11g00493 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 380 IPR015300 -
Cme11g00493 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Cme11g00493 412 SMART B3_2 21 113 IPR003340 GO:0003677
Cme11g00493 412 SMART B3_2 286 381 IPR003340 GO:0003677
Cme11g00493 412 Gene3D - 13 114 IPR015300 -
Cme11g00493 412 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Cme11g00493 412 Pfam B3 DNA binding domain 24 110 IPR003340 GO:0003677
Cme11g00493 412 Gene3D - 263 383 IPR015300 -
Cme11g00493 412 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 229 410 - -
Cme11g00493 412 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 16 167 - -
Cme11g00493 412 CDD B3_DNA 19 111 IPR003340 GO:0003677
Cme11g00493 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cme11g00493 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Cme11g00493 412 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01994 Cme-Chr3:27714654 Cme11g00493 Cme-Chr11:4919046 4.47E-31 dispersed
Cme07g01784 Cme-Chr7:23349279 Cme11g00493 Cme-Chr11:4919046 4.00E-36 dispersed
Cme11g00256 Cme-Chr11:2843546 Cme11g00493 Cme-Chr11:4919046 8.83E-41 dispersed
Cme11g00263 Cme-Chr11:2872793 Cme11g00493 Cme-Chr11:4919046 1.55E-34 dispersed
Cme11g00490 Cme-Chr11:4864535 Cme11g00493 Cme-Chr11:4919046 2.53E-64 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42153 PF02362 B3 5.70E-18 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00493 - - csv:101213446 820.076