Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00493 | ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTTTCCTCAACTATCCAAGCTAGGAAATTGAGACTCCCAGAAACTTTTGTGAGGTTGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTAGGTTTGAGGAAAGCCGACAATAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTACTAGTATTCAGATACGAGGGAAACTCAGCGTTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTATCAATCGGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAATCGAATCTTTGAAGAAATGGAGGATTATGATATTCCCGAAGCCATTCCTTCCAATCAGTCCATGAATTCCGGTTCCTTGCGGAATAAGCTATTTGGTGACGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCTGAGTATTTATCCACTAGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGATTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGGGTTAAAAAGAGTGGAAGCAAAAAGCGGAAAATCGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGTTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCCGGTAATCCTTTCTGCAGAGTCGTCTTGCGACCATCCTATCTATATAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTTAGGATGAGAGAAATTGTACTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAAACCCAAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAGCTGATCAGAAATTAA | 1239 | 41.81 | MTDFSAFRTGGFKRKMPRPHFHKLVLSSTIQARKLRLPETFVRLIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNTSEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEIKKSADEVRFQNLGDDAAHRVKKSGSKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMANPNPASMMNPPPLRSVSHIKLIRN | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4919046 | 4922819 | - | MELO3C021929.2.1 | Cme11g00493 | 341156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00493 | 412 | PANTHER | B3 DOMAIN-CONTAINING | 229 | 410 | - | - | |
Cme11g00493 | 412 | PANTHER | B3 DOMAIN-CONTAINING | 16 | 167 | - | - | |
Cme11g00493 | 412 | CDD | B3_DNA | 284 | 379 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | SUPERFAMILY | DNA-binding pseudobarrel domain | 281 | 380 | IPR015300 | - | |
Cme11g00493 | 412 | ProSiteProfiles | B3 DNA-binding domain profile. | 286 | 381 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | SMART | B3_2 | 21 | 113 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | SMART | B3_2 | 286 | 381 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | Gene3D | - | 13 | 114 | IPR015300 | - | |
Cme11g00493 | 412 | Pfam | B3 DNA binding domain | 289 | 379 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | Pfam | B3 DNA binding domain | 24 | 110 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | Gene3D | - | 263 | 383 | IPR015300 | - | |
Cme11g00493 | 412 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 229 | 410 | - | - | |
Cme11g00493 | 412 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 16 | 167 | - | - | |
Cme11g00493 | 412 | CDD | B3_DNA | 19 | 111 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | SUPERFAMILY | DNA-binding pseudobarrel domain | 17 | 113 | IPR015300 | - | |
Cme11g00493 | 412 | ProSiteProfiles | B3 DNA-binding domain profile. | 20 | 113 | IPR003340 | GO:0003677 | |
Cme11g00493 | 412 | MobiDBLite | consensus disorder prediction | 216 | 244 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01994 | Cme-Chr3:27714654 | Cme11g00493 | Cme-Chr11:4919046 | 4.47E-31 | dispersed | |
Cme07g01784 | Cme-Chr7:23349279 | Cme11g00493 | Cme-Chr11:4919046 | 4.00E-36 | dispersed | |
Cme11g00256 | Cme-Chr11:2843546 | Cme11g00493 | Cme-Chr11:4919046 | 8.83E-41 | dispersed | |
Cme11g00263 | Cme-Chr11:2872793 | Cme11g00493 | Cme-Chr11:4919046 | 1.55E-34 | dispersed | |
Cme11g00490 | Cme-Chr11:4864535 | Cme11g00493 | Cme-Chr11:4919046 | 2.53E-64 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42153 | PF02362 | B3 | 5.70E-18 | CL0405 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00493 | - | - | csv:101213446 | 820.076 |