Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00501 ATGCATTATTTGAATCTCCTCTTCTTCTTCCTCTTCCTTTCTCCCACACTAACCAAATCCCTATCAGATCCCCCGCCTAGCCCCGACGTAAGCAGCGGTGGAAAGCACTTCGTCCTAGTTCACGGAGCCTGCCTCGGGGCCTGGTCCTGGTACAAGCTATCAACGCTGCTCCGATCCGCGGGGCATCGGGTGACAGCGTTAGACATGGCGGGGGCTGGAATTGATCCTCGGGAGGCGGAGAGCCTGACGTTCAACGAATACGTTGAGCCGTTGAGAAGTTTCATGGCGGAGGTGGGGGAGGATGAGAAGGTGATTCTGGTAGGGCACAGCCAAGGCGGGCTTTGCATATCGAAGGCAATGGAGGAATATCCGGAGAAAATATGTGTTGCGGTATTTGTGGTTGCCGCTATGCCTGGCCCAGCCCTAAACGCTTCATTTCTAATTGGTGAGTTACGCAAGAGGTTAGATTTTGGGCCTGACAGCCGTTATACATATGGTAATGGGCCCACAAGCCCACCAACAACTTTGACATTTGGCCCATTGTTCTTGGCCGCAAGTGTATTCAACAAAAGCCCGCCGGAGGACTTGACATTAGGACGGATATTAGTGAGACCAACCCATTTGTTTGGAGGAGAGCAATGGAACAAAGATTTAGTTCTGACAAAGGAAAGATATGGCGCCGTCAAAAGAGTTTTTGTTGTTTCGGATAAGGATAAAGTTATCAAGAAAAACTTTCAAAAATGGGTTATTCGTAGAAACCCACCTAATGGTGTTGTGGAAGTTAAAGGATCAGATCATATGGTCATGATGTCTAAGCCTTTAGATCTCTTCAACATACTTTCACACATTGCTCGTCAATATTCTTAG 867 48.1 MHYLNLLFFFLFLSPTLTKSLSDPPPSPDVSSGGKHFVLVHGACLGAWSWYKLSTLLRSAGHRVTALDMAGAGIDPREAESLTFNEYVEPLRSFMAEVGEDEKVILVGHSQGGLCISKAMEEYPEKICVAVFVVAAMPGPALNASFLIGELRKRLDFGPDSRYTYGNGPTSPPTTLTFGPLFLAASVFNKSPPEDLTLGRILVRPTHLFGGEQWNKDLVLTKERYGAVKRVFVVSDKDKVIKKNFQKWVIRRNPPNGVVEVKGSDHMVMMSKPLDLFNILSHIARQYS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4988488 4993039 + MELO3C021922.2.1 Cme11g00501 341164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00501 288 PANTHER ESTERASE PIR7A-RELATED 29 286 - -
Cme11g00501 288 SUPERFAMILY alpha/beta-Hydrolases 31 285 IPR029058 -
Cme11g00501 288 Gene3D alpha/beta hydrolase 32 288 IPR029058 -
Cme11g00501 288 PANTHER METHYLESTERASE FAMILY MEMBER 29 286 IPR045889 -
Cme11g00501 288 Pfam Alpha/beta hydrolase family 37 277 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00501 - - - csv:101207795 480.715
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00018 Cme11g00501 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00018 Cme-Chr1:170997 Cme11g00501 Cme-Chr11:4988488 2.39E-81 dispersed
Cme01g00021 Cme-Chr1:180323 Cme11g00501 Cme-Chr11:4988488 2.11E-95 dispersed
Cme08g00539 Cme-Chr8:3369179 Cme11g00501 Cme-Chr11:4988488 1.32E-71 dispersed
Cme08g00540 Cme-Chr8:3373722 Cme11g00501 Cme-Chr11:4988488 2.14E-66 dispersed
Cme07g00989 Cme-Chr7:11006654 Cme11g00501 Cme-Chr11:4988488 9.14E-50 transposed
Cme09g00023 Cme-Chr9:223228 Cme11g00501 Cme-Chr11:4988488 4.07E-40 transposed
Cme09g00138 Cme-Chr9:1018551 Cme11g00501 Cme-Chr11:4988488 2.09E-43 transposed
Cme09g00211 Cme-Chr9:1649234 Cme11g00501 Cme-Chr11:4988488 4.13E-51 transposed
Cme12g01140 Cme-Chr12:19434100 Cme11g00501 Cme-Chr11:4988488 8.90E-84 transposed
Cme11g00501 Cme-Chr11:4988488 Cme08g00537 Cme-Chr8:3359632 8.08E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00501 Cme_Chr11 FPKM 1.686436 1.731697 2.078652 2.709094 5.315189 4.443723 5.249482 1.136033 1.604456 1.767913