Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00509 ATGCCTCCCAACACTCCCATTTTCCTCTCTCTTCTCTTCCTAATTTTTCCCTTCTTCATTCAACAATCTAATGCTTACATTGAGCTTAGACCTGACTTTTACGATGAGTCGTGCCCCCGTTTGCCAATGATAATTCGGTATCATATTTGGGCCGCTGTCCAAAATGATTCTAGAATGGCTGCATCACTATTGCGGTTGAATTTTCACGACTGCATTGTAGACGGATGTGAGGCATCGGTGTTGCTTGATGATACGAGAGATATGAAAGGAGAGAAAAATGCGCCGGGTAACGTGAAATCGCTTCGAGGATTTGAAGTGATTGATGGGATAAAAGCAGATCTAGAAACATATTGCCCACAGACAGTTTCATGTGCTGATATTGTGAATCTTGCAGCTAGAGAAGCTGTGTATTTGGTTGGAGGGCCATTTTGGCACCTTCCACTGGGACGTAGAGATGGTTTAACCGCAAGCTTAAAATCAGTGCTGGCTCAGCTCCCATCTCCCAAGGCATCTCTAGAGAACAACACCGCCAAGTTCATCTCAAAAGGCCTGGACTTAAAAGATCTCGTCGTCCTTTCAGGAGCCCACACCATCGGCTTCGCCCGCTGCGTCACATTCAAAGCCCGTCTCTTCAACTACAAAGGCTCCGGAAACCCAGATCCTGACATAAACACCGCAATGCTCTCCGATCTCCGGTCCATGTGCCCCAACAGGAACGACGGCACCGGGGCCAATTTGGCGCCGCTGGATGTGGCCAGTTACGACAGGTTCGACAACGAGTATTTTACCAATCTGATTGGCAATGTTGGGCTTTTAGAGTCGGATCAGGGTCTGATGGCGGACCCCCAGACGGCGAGAATGGTTAGAGAATACAGTTTTGATCCGAATCTGTTCTACGAAGACTTTTCGGAGTCGATGATGAGGATGAGTTTGGTTGGGGTTATGACTGGCCGTGAAGGGCAGATTCGAAAGCAATGTGGCGTTGTTAATAATGATGATGGGTATTGA 1008 47.72 MPPNTPIFLSLLFLIFPFFIQQSNAYIELRPDFYDESCPRLPMIIRYHIWAAVQNDSRMAASLLRLNFHDCIVDGCEASVLLDDTRDMKGEKNAPGNVKSLRGFEVIDGIKADLETYCPQTVSCADIVNLAAREAVYLVGGPFWHLPLGRRDGLTASLKSVLAQLPSPKASLENNTAKFISKGLDLKDLVVLSGAHTIGFARCVTFKARLFNYKGSGNPDPDINTAMLSDLRSMCPNRNDGTGANLAPLDVASYDRFDNEYFTNLIGNVGLLESDQGLMADPQTARMVREYSFDPNLFYEDFSESMMRMSLVGVMTGREGQIRKQCGVVNNDDGY 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5199458 5201943 + MELO3C021914.2.1 Cme11g00509 341172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00509 335 Gene3D - 32 330 - -
Cme11g00509 335 Pfam Peroxidase 47 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Cme11g00509 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cme11g00509 335 PANTHER PEROXIDASE 10 18 329 - -
Cme11g00509 335 PANTHER PEROXIDASE 72-RELATED 18 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 Gene3D Peroxidase, domain 2 166 309 - -
Cme11g00509 335 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601|GO:0042744
Cme11g00509 335 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g00509 335 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00509 Cme-Chr11:5199458 Cme07g01686 Cme-Chr7:22396550 9.24E-97 dispersed
Cme01g01517 Cme-Chr1:19973538 Cme11g00509 Cme-Chr11:5199458 3.19E-74 transposed
Cme10g00555 Cme-Chr10:3554698 Cme11g00509 Cme-Chr11:5199458 6.44E-11 transposed
Cme11g00509 Cme-Chr11:5199458 Cme08g00553 Cme-Chr8:3469424 6.63E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00509 K00430 - csv:101209504 644.039