Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00519 AAAGCCATAAGAAAGAGATATTCATTTTTATATTGGCATAAAATTAAAAGACTCAGAAATTTCTCTTTCAATTATATCCTCCTCTTCGTCTGCCGCTTCTTTCTCCTTTCATCACTACTCTCTCCCATGGCTTCCACTGAAATTGCCCACAACTTTTCCCCTATGATTATCGTTTATAAAGACGGTCGCACCGAAAGACTCGTCGGCAATGAATTAATCGATCCCTCTCTTGACCCTTTAACAGGCGTTGAGTCCAAAGACATCATCATCTCGCCCGAAACCCCCGTCTCTGCTCGGATTTACAGGCCCAAACCCACCGCAGAACCTCACAAGCTTCCTCTTCTCATTTATTTTCACGGCGGCGGCTTCTGCATCGAATCAGCATTCTCTCCTACCTATCACAACCATCTCAACTCCTTAGTCGCTGAAGCCAACGTCATCGCTATCTCCGTCGAGTACCGGCGAGCTCCGGAATACCCACTTCCGATCGCTTATGAAGATTGCTGGACTGCTTTGAAATGGGTTGCCGCCCACTCGGCTGGAACCGGGCCAGAGGAGTGGTTGAATGAAATTGCAGATTTGAACCGGGTTTATTTCGCCGGAGATAGCGCTGGAGCCAACATCGCTAATAAAATGGCGATCCGGGTCGGAATCGAAGGGGTGGCCGGGTTGAATCTGAAGGGATTGATGTTGATTCATCCTTATTTCTGGGGAGAGAAATTGATCGGAGACGAAGAGAAGCTGAAGCCGGAAGATAGATGGTTTATTGAGAAATTGTGGTATTTGGCTTGTCCTACGATTAGCGGGTTAGATGACCCGGTTGTGAACCCGGAATTTGAACCGAAATTGGGGGGGCTAGCGGCGGAGAGAGTGGCGGTTTATGTGGCAGAGAAGGATTCTCTGAAAGACAGAGGATGGTTTTACAGTGAGTGTTTGAAGAAATCGGGATGGGGCGGCGCTGTCGAGGTGGTGGAGACGAAAGGCCAAGGCCACGTCTTTCATTTGTTCAACCCTACGTCAGACGACGCGGTTGATTTCGTCGGAAAGCTTGCGGCCTTCATCAACGGTGGATCCCGAGATTGA 1083 48.85 KAIRKRYSFLYWHKIKRLRNFSFNYILLFVCRFFLLSSLLSPMASTEIAHNFSPMIIVYKDGRTERLVGNELIDPSLDPLTGVESKDIIISPETPVSARIYRPKPTAEPHKLPLLIYFHGGGFCIESAFSPTYHNHLNSLVAEANVIAISVEYRRAPEYPLPIAYEDCWTALKWVAAHSAGTGPEEWLNEIADLNRVYFAGDSAGANIANKMAIRVGIEGVAGLNLKGLMLIHPYFWGEKLIGDEEKLKPEDRWFIEKLWYLACPTISGLDDPVVNPEFEPKLGGLAAERVAVYVAEKDSLKDRGWFYSECLKKSGWGGAVEVVETKGQGHVFHLFNPTSDDAVDFVGKLAAFINGGSRD 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5380593 5381698 + MELO3C021903.2.1 Cme11g00519 341182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00519 360 Pfam alpha/beta hydrolase fold 115 334 IPR013094 GO:0016787
Cme11g00519 360 Gene3D alpha/beta hydrolase 45 356 IPR029058 -
Cme11g00519 360 SUPERFAMILY alpha/beta-Hydrolases 44 355 IPR029058 -
Cme11g00519 360 PANTHER ARYLACETAMIDE DEACETYLASE 46 354 - -
Cme11g00519 360 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 197 209 IPR033140 -
Cme11g00519 360 PANTHER CARBOXYLESTERASE 13-RELATED 46 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00519 - - - csv:101219532 605.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02012 Cme-Chr3:27826563 Cme11g00519 Cme-Chr11:5380593 1.24E-98 dispersed
Cme07g00370 Cme-Chr7:2381698 Cme11g00519 Cme-Chr11:5380593 8.15E-35 dispersed
Cme11g00519 Cme-Chr11:5380593 Cme05g00056 Cme-Chr5:356738 1.18E-43 dispersed
Cme11g00519 Cme-Chr11:5380593 Cme11g00528 Cme-Chr11:5468292 7.80E-151 proximal
Cme11g00518 Cme-Chr11:5340349 Cme11g00519 Cme-Chr11:5380593 1.72E-85 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g440 . . . Bda08g00850 . . . . . . Cma02g00445 Cma20g00895 . . . . . . . . . . . . . . . . . . . . . Cone3ag1108 . Lsi10g00295 . Chy11g00445 . . . . . . . . . . Cmo02g00454 Cmo20g00901 . . . . . . Bhi10g02089 Tan05g1411 . . Hepe08g1073 . . Cla09g01700 Cam09g1796 Cec09g1859 Cco09g1949 . . Cre01g0711 . . . Cme11g00519
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00519 Cme_Chr11 FPKM 10.147662 11.096957 21.297754 20.894724 10.096313 9.506763 10.072255 16.944912 15.546714 15.956009