Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00528 ATGGCTTCCGACGATATTGCCTTAAACGCTGCACCTTATTTCATCGTTTACAAAGACGGTCGAATCGACAGGCTCATCGGCAACGATATCGATCCTCCCGGTCTCGACCCCATAACCGGCGTCGAGTCCAAGGACGTCGATATCTCGCCCGACGTCACCGTTCGTGTCTACAGACCCAAATCCGCCGCCGAAAAAATATCTGAGAAGCTCCCTCTTCTCGTTTACTTTCACGGCGGTGGGTTCTGCATCGAAACCGCATTTTCCCCTTTCTACCACCAGCACATCAGCGCTTGGGTAGCCGAAGCCAACATCATCGCCGTCTCCGTCAACTACAGGCGAGCACCGGAGCACCAGTTACCGATTCCTTTTGAAGATGCATGGACCTCCATGAAATGGATCGCGTCCCACTCGGAAGGAAAAGGACAGGATGAGTGGCTGAATGAAATCGCAGATCTGAACCAGGTTTATTTAGCCGGAGACAGCGCCGGAGGAAACATGGCACACAGGATGGCGTTGAGGACGGTGACGGAGGGGCTTGAGGGAGTGAAGATCAAGGGATTGCAATTGATTCACCCACATTTTTGGGGTGGAAAATTGATCGGAGAGGAAAATGATTGGGATCCAAATGACTTGTTCGTAGTGGAGAACCTGTGGTTTGTAGTTTCGAAGGATATAAAGACACTAGATGATCCGATTGTGAACCCAGAGCACGATCCGGATTTGGGGAGGATGCCGGCGGAGAGAGTGGGGGTGTATGTGGCGGAGAAGGACAATCTGAAGGAGAGGGGAAGGCATTATGCGGAGTGTTTGAAGAAATCGGGATGGGGTGGAACGGTGGAGGTGGTGGAGACGGAAGGAGAAGGACATGTATTCCATTTGTTCAATCCGACGTGTGATATTGCGGGGGAATTGGTGAAACAGCTGGCGGCGTTCATCAACAGCGGCTGCCGTGGGTAA 957 52.25 MASDDIALNAAPYFIVYKDGRIDRLIGNDIDPPGLDPITGVESKDVDISPDVTVRVYRPKSAAEKISEKLPLLVYFHGGGFCIETAFSPFYHQHISAWVAEANIIAVSVNYRRAPEHQLPIPFEDAWTSMKWIASHSEGKGQDEWLNEIADLNQVYLAGDSAGGNMAHRMALRTVTEGLEGVKIKGLQLIHPHFWGGKLIGEENDWDPNDLFVVENLWFVVSKDIKTLDDPIVNPEHDPDLGRMPAERVGVYVAEKDNLKERGRHYAECLKKSGWGGTVEVVETEGEGHVFHLFNPTCDIAGELVKQLAAFINSGCRG 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5468292 5469465 + MELO3C021901.2.1 Cme11g00528 341191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00528 318 PANTHER ARYLACETAMIDE DEACETYLASE 3 313 - -
Cme11g00528 318 SUPERFAMILY alpha/beta-Hydrolases 12 313 IPR029058 -
Cme11g00528 318 Gene3D alpha/beta hydrolase 8 315 IPR029058 -
Cme11g00528 318 Pfam alpha/beta hydrolase fold 73 292 IPR013094 GO:0016787
Cme11g00528 318 PANTHER CARBOXYLESTERASE 2-RELATED 3 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00528 - - - csv:101208483 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00518 Cme-Chr11:5340349 Cme11g00528 Cme-Chr11:5468292 1.39E-80 dispersed
Cme11g00528 Cme-Chr11:5468292 Cme10g00277 Cme-Chr10:1812749 3.21E-40 dispersed
Cme11g00519 Cme-Chr11:5380593 Cme11g00528 Cme-Chr11:5468292 7.80E-151 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g438 . . . . . . . Bma12g00465 . . . Cma20g00896 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00291 . Chy11g00446 . . . . . . . . . . . Cmo20g00903 . . . . . . Bhi10g02091 Tan05g1416 Cmetu11g2337 . Hepe08g1077 . . . . . . . . . . . . Cme11g00528
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00528 Cme_Chr11 FPKM 0.0 0.0 0.0 0.306644 0.572984 0.0 1.073471 0.0 0.0 0.112054