Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00541 ATGAGTATCAAGGTTGAACTTCAGAAGATTGGAATTCTTGGGCTTCAGATGATATGGCATTTCCTACACTTCATTGTTAGCGCATCTTACTTTGTGGTTGGTATTGCCACAACACTTGAAAGCTATTTGATATCTTGGGGATTCCCATGCAAGTACAAGCATCTTAATATAGACAGGGTTCAATATCTTGCCATTGTGGTCGAAAGTGATGAAGCTTATAATACATTAAAAATTATTGAACTTCTGGAATGGTTGATATCGTTGGGCATTAGAAGCGTTTGCTTGTATGATGCTGAAGGGGTGCTTAAACAGTCCAAGGAAATCATTTTGAAGAAAGTAAAGAATGCGTCTGAATTTCAGGGGATTGATGAACCTCTCCAACTAAACAAAAAAGGCATTACTCTGGAGTTCATATCAGCCTCTGATGGAAAGGAAGCCATTGCCAGAGCAGCTAATTTTCTTCTTCAAAATAAATGGAGAAAAACCAACATGAGTGGAGACCAGAAGCAATGCTTATCTGAATCTCAAATGACCGAGGCTTTAAAAGCAGTTGGTTGTGGAGGGCTTGATCCTGACCTCATTTTAGTATATGGGCCTACAAGATGTCACTTTGGGTTTCCTGCCTGGAGGATCCGCTACACAGAGATTCTACACATGGGACCGTTGAAGTCCATGTTATATGGTTCATTGCTAAAAGCCATTTACAAGTTTACCATGGTGCAACAGAACTATGGTAAATGA 741 39.81 MSIKVELQKIGILGLQMIWHFLHFIVSASYFVVGIATTLESYLISWGFPCKYKHLNIDRVQYLAIVVESDEAYNTLKIIELLEWLISLGIRSVCLYDAEGVLKQSKEIILKKVKNASEFQGIDEPLQLNKKGITLEFISASDGKEAIARAANFLLQNKWRKTNMSGDQKQCLSESQMTEALKAVGCGGLDPDLILVYGPTRCHFGFPAWRIRYTEILHMGPLKSMLYGSLLKAIYKFTMVQQNYGK 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5715881 5728425 + MELO3C021891.2.1 Cme11g00541 341204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00541 246 Gene3D - 100 246 IPR036424 GO:0016765
Cme11g00541 246 SUPERFAMILY Undecaprenyl diphosphate synthase 61 238 IPR036424 GO:0016765
Cme11g00541 246 PANTHER UNCHARACTERIZED 8 246 IPR038887 GO:0019408|GO:1904423
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00541 K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87] - csv:101219590 479.944
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g394 . Blo15g00750 Bda06g01073 . Bpe07g00375 . . Bma12g00441 . . Cma02g00450 . Car02g00306 . . . . . . . . . . . . . . . . . . Cone12ag1084 . Cone3ag1181 Cone10ag0992 Lsi10g00528 . . . . . . . . . . . . Cmo02g00459 . . . . . Cpe14g00291 Cpe01g00437 . . . . . . . . . . . . . . . . . Cme11g00541
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006125 0 2 0 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 7 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00541 Cme_Chr11 FPKM 0.0 0.0 1.420132 0.0 0.0 0.0 0.0 2.393933 1.715029 0.0