Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00548 ATGAAGATTCTTCCTCAATGGGCAACAGTCGGATTTTCAGCTGCAACAGGGGCATATTTAGAGAGGCATTTGCTATTTTCTTGGGAGTTCAATTCCAGTTTGGAAATGAAACAATCAGTTGGTGTTGGTACTGAAAAGAATGGGAAAAAAGTTGATGTAATTGTGGGTGTGACTGTTTCTGTAGGAGCTTCAATCCTCATAGAAATTGCAGCTTTTGTACTTTGGAGATTGAAGCAAAAGAAAAAAAATCTGAAAAAAAAAGTGGCTGAGGAGGTCAACTTGACATCCATTAATGATGATTTGGAAACAGGGGCTGGACCTAGAAGGTTTTCTCATAAGCTTCTTGCCATGGCTACCAACAACTTCTCCAAAGAAAGGAAGCTTGGTCAAGGAGGATTTGGAGCAGTGTATAGAGGGTATGTACCAGACATAGATTTGGCAGTGGCCGTGAAGAAAATCTCGAGGGGTTTGAGACAGGGGAGGAAAGAGTATATAACTGAAGTGAAGATCATTAGTCAGCTTCGCCGTCGAAATTTGGTGCAACTCGTTGGTTGGTGTTATGATAAGGGTGAGTTCTTGTTGGTTTACGAATTCATGCCTAATGATAGTCTTGATTCTCATCTCTTTGAAGGGAAACAGTGTGTGGTTCATAGAGATATTAAATCTAGTAATGTGGTGTTAGATTCGAACTTTAATGTCAAGCTTGGAGATTTTGGGTTGGCTCGATCAATGGACCATGAGTTGGGTGCTCAAACAGCTGGGTTGGTTGGAACTTTAGGCTACTTAGCTCCTAAATACATTAGCACAGATTTGTTTAGTTTTGGAGTTGTTGCTTTGGAGATTGCCACGGAAAAAATGTCAAGAACCTCCATGGAAGCTGAATCTCCTAAGGGTCTGGTGGAGTGGGTTTGGGATCTTTATGGGGGTGGGCAATTGATTGATGGCATGGATGAGAAATTGCAATCTGATTTTGACAAAAAACAAGCGGAGTGCTTGATGCTTGTTGGATTATGGAGTGCTTATCCTGACCCTAAACTTCGACCTTCCATGAAACAAGTAATTCAAGTTCTTAACTTTGAGACAACAATGCCAAATCTACCAAATAAAATGCCTCTTCCTATATATCCTGCTCCTCCCACATCGATGAGTTCAAATGAAGCTTCCATGACAGTAAGTCTTGACATGGGTCGTTAA 1194 41.04 MKILPQWATVGFSAATGAYLERHLLFSWEFNSSLEMKQSVGVGTEKNGKKVDVIVGVTVSVGASILIEIAAFVLWRLKQKKKNLKKKVAEEVNLTSINDDLETGAGPRRFSHKLLAMATNNFSKERKLGQGGFGAVYRGYVPDIDLAVAVKKISRGLRQGRKEYITEVKIISQLRRRNLVQLVGWCYDKGEFLLVYEFMPNDSLDSHLFEGKQCVVHRDIKSSNVVLDSNFNVKLGDFGLARSMDHELGAQTAGLVGTLGYLAPKYISTDLFSFGVVALEIATEKMSRTSMEAESPKGLVEWVWDLYGGGQLIDGMDEKLQSDFDKKQAECLMLVGLWSAYPDPKLRPSMKQVIQVLNFETTMPNLPNKMPLPIYPAPPTSMSSNEASMTVSLDMGR 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5787434 5788760 + MELO3C021883.2.1 Cme11g00548 341211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00548 397 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 142 IPR013320 -
Cme11g00548 397 MobiDBLite consensus disorder prediction 377 397 - -
Cme11g00548 397 PANTHER PUTATIVE-RELATED 211 397 - -
Cme11g00548 397 ProSiteProfiles Protein kinase domain profile. 122 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00548 397 SUPERFAMILY Protein kinase-like (PK-like) 106 383 IPR011009 -
Cme11g00548 397 Gene3D - 1 45 - -
Cme11g00548 397 Pfam Protein kinase domain 212 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00548 397 ProSitePatterns Protein kinases ATP-binding region signature. 128 152 IPR017441 GO:0005524
Cme11g00548 397 Pfam Protein tyrosine and serine/threonine kinase 124 209 IPR001245 GO:0004672|GO:0006468
Cme11g00548 397 Gene3D Phosphorylase Kinase; domain 1 107 198 - -
Cme11g00548 397 SMART serkin_6 122 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00548 397 Coils Coil 74 94 - -
Cme11g00548 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Cme11g00548 397 Gene3D Transferase(Phosphotransferase) domain 1 202 377 - -
Cme11g00548 397 PANTHER PUTATIVE-RELATED 2 210 - -
Cme11g00548 397 PANTHER - 211 397 - -
Cme11g00548 397 PANTHER - 2 210 - -
Cme11g00548 397 Pfam Legume lectin domain 2 39 IPR001220 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00548 Cme-Chr11:5787434 Cme11g00560 Cme-Chr11:5949212 0 dispersed
Cme11g00548 Cme-Chr11:5787434 Cme11g00551 Cme-Chr11:5808000 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65230 PF00069 Pkinase 9.00E-16 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00548 - - csv:101204075 672.159