Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00555 ATGGCTAATTTCTTGTATGTCTTTTCAATGCTAAGCCATTTCATCCTGTTTCTCAATCTTCCTCTCTCTGTTATTTCTGTTTCTTTCAAAATAGACCAATTCAAAACCGATGATAACACCATACTTTATCAAGGAGATGCTGTTGTTCTTGGTGGAGAGATTTTACTAAGTGATCCTGAATTTTCTTGTCATCTTGGTCGAGCTATTTACAAAGATCCAATCCAAATTTGGGATTCTGAAACAGCAAAACTCACTGATTTCACAACCCATTTCACCTTCACCATTGATACACAAAAAAATACAAAATATGGCCAAGGCTTTGCTTTTTTCTTGGCTCCATCTGGTTTTCAAATCCCTCCAAATTCAGCTGGTGGGTTTCTTGGCCTTTACAACAAAACATACAGCAATTCAGTTACTAATCAAATTGTTCATGTTGAGTTTGATACTGGCTCAAATGACTGGGATCCTCCATATGAACATGTGGGTATAAATATTAACTCTGTTACTTCTTCTAACGACACTCGTTGGAATGTTAGCTTACACAGTGGGGATTTGGCTGATGTGTGGATTTCCTACAATTCAACCATCAAAATCTTGAGTGTTTCATGGCTATACCTGAAGACATCCACTTTATTAGAGAATACCACTCTGAGTTATCCTATTGATTTAATGACCGTTCTTCCACAACAGGCGACTGTGGGATTCTCAGCCGCAACTGGTGCTTTATTAGAGAGACATGCTGTATCTTCCTGGGAATTCAACTCTACTTTGGACTTGAAGCCAACAAGTAAAAGTACTGGAAACAATGTCAGTGTAATTGTAGGTGTAACAGTTCCGGTTGGAGGCTTAATTCTTGTGGGAATTATAGTATTTGTTATACTTTGGAGGTTGAAGCAAAAGAAAAGGAAAACAGATCAAGAAAATCTTGAGGAAGTAAATTTGACTTCCATTAATGATGATTTGGAAAGAGGGGCTGGACCCAGAAGGTTTTCTCACAAGCTTCTTGCTATGGCAACAAACAACTTCTCAAATGAAAGAAAGTTAGGGGAAGGAGGATTTGGTGCTGTGTATAGAGGCTACATACAAGATTTGGATTTGAATATAGCTGTGAAGAAAATCTCGAGGGGTTCGAGGCAGGGGAGAAAAGAGTATATAACCGAAGTGAAAATCATTAGTCGGCTTCGTCATCGAAATTTGGTGCAACTAATTGGTTGGTGTCATGATAAGGGTGAGTTCTTGTTAGTTTATGAATTCATGTCTAATGGTAGTCTTGATTCGCATCTATTTGGTAAGAGAACCCCTCTTGCTTGGACTGTGAGGTACAAGATCGTGTTAGGTTTGGGCTCCGCTTTGCTGTATCTTCATGAAGAAGGGGAACAATGTGTGGTTCATAGAGATATCAAATCTAGTAATATCATGTTGGATTCAAACTTCAATGTCAAGCTTGGAGATTTTGGACTCGCTCGATTAATGGACCATGAATTGGGTGCTCAAACAACTGGGTTGGTAGGAACTTTGGGCTACTTAGCTCCTGAATACATAAACACAGGTAGAGCTAGTAAGGAATCCGATGTGTTCAGCTTTGGAGTTGTTGCTTTGGAGATTGCCACTGGAAGAGTGTCAAGAACCTCGATGGAAAAGGAATCTCATAAGGGTTTGGTAGAGTGGGTTTGGGACCTTTATGGGAGTGGACAATTACTTGAGGGTGTGGATGCAAAATTACAATCTAATTTTGACAAAAAACAAGTTGAATGTTTGATGATTGTTGGATTATGGAGTGCTTATCCTGACCCTAGTTTTAGACCTTCCATAAAACAAGTGATTCAAGTTCTTAACTTTGAGGCTACAGTGCCAAATCTTCCAAATAAAATGCCTATTCCTACATACAATGCTCCTTCCACATCAATGAGCTCAAATGAACCTTCCTTCACTGTTAGTCTTGACATGGGTCGTTGA 1956 39.11 MANFLYVFSMLSHFILFLNLPLSVISVSFKIDQFKTDDNTILYQGDAVVLGGEILLSDPEFSCHLGRAIYKDPIQIWDSETAKLTDFTTHFTFTIDTQKNTKYGQGFAFFLAPSGFQIPPNSAGGFLGLYNKTYSNSVTNQIVHVEFDTGSNDWDPPYEHVGININSVTSSNDTRWNVSLHSGDLADVWISYNSTIKILSVSWLYLKTSTLLENTTLSYPIDLMTVLPQQATVGFSAATGALLERHAVSSWEFNSTLDLKPTSKSTGNNVSVIVGVTVPVGGLILVGIIVFVILWRLKQKKRKTDQENLEEVNLTSINDDLERGAGPRRFSHKLLAMATNNFSNERKLGEGGFGAVYRGYIQDLDLNIAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMSNGSLDSHLFGKRTPLAWTVRYKIVLGLGSALLYLHEEGEQCVVHRDIKSSNIMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYINTGRASKESDVFSFGVVALEIATGRVSRTSMEKESHKGLVEWVWDLYGSGQLLEGVDAKLQSNFDKKQVECLMIVGLWSAYPDPSFRPSIKQVIQVLNFEATVPNLPNKMPIPTYNAPSTSMSSNEPSFTVSLDMGR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5866859 5868864 + MELO3C021878.2.1 Cme11g00555 341218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00555 651 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 22 650 - -
Cme11g00555 651 Pfam Legume lectin domain 27 265 IPR001220 GO:0030246
Cme11g00555 651 CDD STKc_IRAK 348 612 - -
Cme11g00555 651 PANTHER - 22 650 - -
Cme11g00555 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cme11g00555 651 SUPERFAMILY Protein kinase-like (PK-like) 326 634 IPR011009 -
Cme11g00555 651 Pfam Protein kinase domain 343 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00555 651 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00555 651 CDD lectin_legume_LecRK_Arcelin_ConA 27 257 IPR001220 GO:0030246
Cme11g00555 651 MobiDBLite consensus disorder prediction 631 645 - -
Cme11g00555 651 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524
Cme11g00555 651 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00555 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 261 IPR013320 -
Cme11g00555 651 Gene3D - 25 271 - -
Cme11g00555 651 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Cme11g00555 651 MobiDBLite consensus disorder prediction 631 651 - -
Cme11g00555 651 Gene3D Transferase(Phosphotransferase) domain 1 419 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00551 Cme-Chr11:5808000 Cme11g00555 Cme-Chr11:5866859 0 dispersed
Cme11g00555 Cme-Chr11:5866859 Cme11g00558 Cme-Chr11:5919793 0 dispersed
Cme11g00555 Cme-Chr11:5866859 Cme11g00556 Cme-Chr11:5890943 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65232 PF00069 Pkinase 1.20E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00555 - - csv:101218247 1202.19