Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00556 ATGACTCCTTCATTGTATGACTTTACAATGCTAAGTCATCTTTTCTTTCTTCTCTGTCTTCCTCTGTGGGTTAGCTCAGTTTTTCTCAAAATTGATCCATTCCAGCCGAATGAAAACCGTTTACTTTTCCAAGGGGATGCAATTTCTTCTTATGAAGCAGTTCTCTTTAGCGATCCTCAGTATTTCTGTAGTGTAGGTTGGGCTATTTACAAAGATGCTGTGCCAATTTGGGACTCTCAAACAGGGAAAATCACGGATTTCACTACCCACTTCTCCTTCACCATTGATACTCAACAGGTTTCTAATTTTGGGCATGGGATTGCTTTTTTCTTGGCTCCACCTGGATTTCAAATCCCTCCGAACTCAGCTGGTGGGTATCTTGGCCTTTTCAATAAAACCTATGCTGATTCATCCACAAACCAGATTGTTCATGTTGAGTTTGATACTTTCTCCAATGAATGGGATCCTAATTTTGAACATGTGGGTATCAATATTAACTCTCTTGCTTCCTCTAATTTCACAAGGTGGAACGTTAGCTTTCACAGTGGGGACATTATTGATGTGTGGATCTCCTACAATTCAACCTCAAAAAATTTGAGTGCTTCGTGGAAATACAAGTATACCTCAAATTCTTCCGAAGATACAGCCCTGAATTACCAGATTGATCTAATGAAGGTTCTTCCTCAACGTGCAACCATAGGATTTTCAGCTTCTACTGGTACATTTTTAGAGCAACATAGCCTATTTTCATGGGAATTCAACTCGAGCTTGGATATATTATCAAATCCAACAAGTGAAAATAATAATAATAAGGGGGGTAAATTTAATATAGTTGTGGTCGTAGTTACTCCATTAGGCGTGTTGATGATGATCATTGCTGCAGTTTCATTTACTCTAGTATTTAGAAGATTGAAGCAAAATAAGAGAAAAGCAGAGGAAGAAAATGTTGAGGAAGTAAAGTTGACATCCATTAACGAAGACTTCGAAAGAGGAGCCGGACCGAGAAGGTTTTCCCGCAAGCTTCTTGCGATGGCTACTAACAACTTCTCAAACAAAAGAAAGCTTGGTGAAGGCGGATTTGGAGCAGTGTACAGAGGGTACCTTCCAGACATAGATTCGACAGTAGCCGTGAAGAAAGTTTCAAGGGGTTCGAAACAAGGAAGAAAGGAGTACATAACTGAGGTTAAGATCATTAGTAGGCTCCGCCATCGCAATCTTGTGCAACTCATAGGTTGGTGCCACGACAAAGGCGAGTTCTTGTTAGTCTATGAATACATGCCAAATGGTAGTCTTGATTTTCATCTTTTTGGTAGAAGAAGTAGTCATCTTGCTTGGGGTACGAGATACAATATTGCTTTAGGTTTAGCCTCTGCATTGTTGTACCTTCATGAAGAATGGGAGCAATGTGTGATTCACAGAGACATCAAATCCAGCAACATCATGTTAGATTCAAGTTTCAATGTCAAGCTTGGGGATTTTGGTCTAGCTCGTTTAATTGACCACGATTTAGGTGCTCAAACAACTGGGTTGGTAGGAACTTTAGGTTACTTGGCACCTGAGTACATAAGCACCGGTAAAGCTAGTAAAGAATCTGATATTTATAGCTTTGGGGTGGTTGTTTTAGAGATTGTCACAGGGAGAATGTCAAGAACTGTCATAGAAGAGGAATCTCACAAGGGTTTGGTGGAGTGGGTTTGGGATCTCTATGGAAGTGGCCGATTGCTTGTAGCTGTTGATGAAAAATTACAATCTGATTATGACAAACAACAGGTAGAACGTTTGATGCTCATTGGATTGTGGAGTGCTCATCCAGATCCCAATCTTAGACCTTCAATTAAACAAGCAATTCAAGTTTTAAACTTTGAAACAAGGATCCCAAATCTTCCGACTGAAATGCCTATTCCTTTCTATTGTGCTCCTAATTTCACATTCATGACATCTAAAGAAACTTCCATTACGGTAAGCCTTGACGTAGGTCGTTGA 1983 39.89 MTPSLYDFTMLSHLFFLLCLPLWVSSVFLKIDPFQPNENRLLFQGDAISSYEAVLFSDPQYFCSVGWAIYKDAVPIWDSQTGKITDFTTHFSFTIDTQQVSNFGHGIAFFLAPPGFQIPPNSAGGYLGLFNKTYADSSTNQIVHVEFDTFSNEWDPNFEHVGININSLASSNFTRWNVSFHSGDIIDVWISYNSTSKNLSASWKYKYTSNSSEDTALNYQIDLMKVLPQRATIGFSASTGTFLEQHSLFSWEFNSSLDILSNPTSENNNNKGGKFNIVVVVVTPLGVLMMIIAAVSFTLVFRRLKQNKRKAEEENVEEVKLTSINEDFERGAGPRRFSRKLLAMATNNFSNKRKLGEGGFGAVYRGYLPDIDSTVAVKKVSRGSKQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEYMPNGSLDFHLFGRRSSHLAWGTRYNIALGLASALLYLHEEWEQCVIHRDIKSSNIMLDSSFNVKLGDFGLARLIDHDLGAQTTGLVGTLGYLAPEYISTGKASKESDIYSFGVVVLEIVTGRMSRTVIEEESHKGLVEWVWDLYGSGRLLVAVDEKLQSDYDKQQVERLMLIGLWSAHPDPNLRPSIKQAIQVLNFETRIPNLPTEMPIPFYCAPNFTFMTSKETSITVSLDVGR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5890943 5892925 + MELO3C021877.2.1 Cme11g00556 341219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00556 660 CDD lectin_legume_LecRK_Arcelin_ConA 34 257 IPR001220 GO:0030246
Cme11g00556 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 260 IPR013320 -
Cme11g00556 660 Pfam Protein kinase domain 350 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00556 660 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cme11g00556 660 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 24 645 - -
Cme11g00556 660 ProSitePatterns Protein kinases ATP-binding region signature. 355 379 IPR017441 GO:0005524
Cme11g00556 660 PANTHER - 24 645 - -
Cme11g00556 660 Coils Coil 301 321 - -
Cme11g00556 660 SUPERFAMILY Protein kinase-like (PK-like) 333 648 IPR011009 -
Cme11g00556 660 Pfam Legume lectin domain 33 263 IPR001220 GO:0030246
Cme11g00556 660 Gene3D Transferase(Phosphotransferase) domain 1 426 640 - -
Cme11g00556 660 CDD STKc_IRAK 355 620 - -
Cme11g00556 660 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00556 660 Gene3D - 26 270 - -
Cme11g00556 660 SMART serkin_6 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00556 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00556 Cme-Chr11:5890943 Cme11g00560 Cme-Chr11:5949212 0 dispersed
Cme11g00555 Cme-Chr11:5866859 Cme11g00556 Cme-Chr11:5890943 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65233 PF00069 Pkinase 4.30E-51 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00556 - - bhj:120088847 1002.28