Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00558 ATGGCTACTCTCTTGTATTCCTTGGCAATGCTAGGCCATTTCGTCCTGTTTCTCCATATTCCTCTCTCTGTTATCTCTGTTTCTTTCAAAATAGACCAATTCAAGTCCAATGATAGCACCATACTTTATCAGGGAGATGCTGTTGTTGTTGGTGGAGAGATTTTACTGAGTGACCCTGGTTTTACTTGTCATGTTGGTCGTGCTATTTACAGAGATCCTATTCCAATTTGGGACTCTGAAACAGCAAAAGTCACAGATTTCATAACCCATTTCTCCTTTACCATCGATACACGAGCAGCTCCAAGGTATGGCAGTGGGATTGCTTTTTTCTTGGCTCCATCTGGGTTTCAAATCCCTCCCAATTCAGCAGGTGGGTTTCTTGGCCTGTACAACAAGACCTACAGTAATTCATTAGCAAATCAAATTGTGCATGTTGAGTTTGATACCAACATAAATGATTGGGATCCTCCCTATGAACATGTGGGCATAAATATTAACTCTGTTATTTCTTCTAATTACACTCGTTTGAATATTAGCTTACACGATGGGGATTTGGCTGATGTGTGGATTTCTTATAATTCAACCATCAGAATCTTGAATGTATCTTGGAAATACCAAAATACATCCACTTTATCAGAGAATACCACTCTGAGTTATCCTATTGATTTAATAACGGTTCTTCCACAACAGGCGACTGTGGGATTTTCATCCACCACTGGTGCTTTTATAGAGAGACATGCTGTATCTTCTTGGGAATTCAACTCTACTTTGGACATGAAACCAACAAGTGAAAGTAATGGAAACAAATTTAGTGTCATTGTTGGCGTAACGGTTTCGGTTGGAGGGTTAACACTTGTGGCAATTATAGCGTTTGTTGTACTTTGGAGGTTAGTGGAAAAGAAAAGAAAAACAGAGAAAGAAAATCTTGATGAAGTAAACTTGACATCCATTAATGATTATTTGGAAAGAGGGGCTAGACCTAGAAGGTTTTCTCAGAAGCTTCTTGTCATGGCAACCAACAACTTCTCTAATGAGAGAAAGTTAGGCCAAGGAGGATTTGGTGCTGTGTATAGAGGCAACATACAAGATTTAGATTTGAATATAGCTGTGAAGAAAATCTCAAGGGGTTCGAGGCAGGGGAGAAAAGAGTATATAACCGAAGTGAAGATCATTAGTCGACTTCGTCATCGAAACTTAGTGCAGCTCATTGGCTGGTGTCATGATAAGGGTGAGTTATTGTTGGATTATGAATTCATGTCTAATGGTAGTCTTGATTCTCATCTCTTTGGTAAGAGAAGCCCTCTTGCTTGGACTGTGAGATACAACATTGCGTTAGGTTTGGGCTCCGCTTTGCTGTATCTTCATGAAGAAGGGGAACAGTGTGTGGTTCATAGAGATATCAAATCTAGTAATATCATGTTGGATTCAAACTTCAATGTCAAGCTTGGAGATTTTGGGCTCGCTCGATTAATGGACCATGAATTGGGTGCTCAAACAACTAGGTTGGTAGGAACTTTAGGCTACTTAGCTCCTGAATACATAAACACAGGTAGAGCCAGTAAAGAATCTGATGTGTTCAGTTTTGGAGTTGTTGCTTTGGAGATTGCCACTGGGAGAGTGTCAAGAACCTCGATGGAAAAGGAATCTCATAAGGGTTTGGTGGATTGGGTTTGGGATCTTTATGGGAGTGGACAATTACTTAAGGGTGTGGATGCCAAATTACAATCTAATTTTGACAAAAAAACAAGCTGA 1752 39.84 MATLLYSLAMLGHFVLFLHIPLSVISVSFKIDQFKSNDSTILYQGDAVVVGGEILLSDPGFTCHVGRAIYRDPIPIWDSETAKVTDFITHFSFTIDTRAAPRYGSGIAFFLAPSGFQIPPNSAGGFLGLYNKTYSNSLANQIVHVEFDTNINDWDPPYEHVGININSVISSNYTRLNISLHDGDLADVWISYNSTIRILNVSWKYQNTSTLSENTTLSYPIDLITVLPQQATVGFSSTTGAFIERHAVSSWEFNSTLDMKPTSESNGNKFSVIVGVTVSVGGLTLVAIIAFVVLWRLVEKKRKTEKENLDEVNLTSINDYLERGARPRRFSQKLLVMATNNFSNERKLGQGGFGAVYRGNIQDLDLNIAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGELLLDYEFMSNGSLDSHLFGKRSPLAWTVRYNIALGLGSALLYLHEEGEQCVVHRDIKSSNIMLDSNFNVKLGDFGLARLMDHELGAQTTRLVGTLGYLAPEYINTGRASKESDVFSFGVVALEIATGRVSRTSMEKESHKGLVDWVWDLYGSGQLLKGVDAKLQSNFDKKTS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5919793 5921552 + MELO3C021876.2.1 Cme11g00558 341221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00558 583 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 262 IPR013320 -
Cme11g00558 583 Gene3D - 25 271 - -
Cme11g00558 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cme11g00558 583 SUPERFAMILY Protein kinase-like (PK-like) 322 547 IPR011009 -
Cme11g00558 583 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Cme11g00558 583 Pfam Protein kinase domain 343 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00558 583 SMART serkin_6 342 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00558 583 CDD lectin_legume_LecRK_Arcelin_ConA 27 257 IPR001220 GO:0030246
Cme11g00558 583 Pfam Legume lectin domain 27 265 IPR001220 GO:0030246
Cme11g00558 583 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524
Cme11g00558 583 PANTHER - 19 581 - -
Cme11g00558 583 ProSiteProfiles Protein kinase domain profile. 342 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00558 583 Gene3D Transferase(Phosphotransferase) domain 1 419 583 - -
Cme11g00558 583 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 19 581 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00555 Cme-Chr11:5866859 Cme11g00558 Cme-Chr11:5919793 0 dispersed
Cme11g00558 Cme-Chr11:5919793 Cme11g00560 Cme-Chr11:5949212 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65234 PF00139 Lectin_legB 5.30E-66 CL0004 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00558 - - csv:101218247 998.808