Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00560 ATGGCTACTTCCTCCAATGCCTTTCCAATATCAAATCATCTCCTTTTCATTCTCTTCCTTCTTTCCTTCCTTACTCCCACCATTGACTCAATTTCTTTCAAAATAGATAGATTCAAAACCAATGAAAGTAATACAGTTTATCAAGGAGATGCAATTCCATCAGTTGGAGCAATTGAATTGAACAATGTTGATTATCTTTGTAGAGTTGGTTGGGTTATTTATAAAGACATTGTTCCTATTTGGGACTCCAAAACAGGACAAACCACCGATTTCACAACCCATTTCACCTTCTTAATTGATACTCGAAATGCTCAAAACTATGGCCATGGAATAGCTTTTTTTCTAGCTCCAATTGGATTCCAAATCCCTCCAAATTCAGCTGGTGGCTTTCTTGGCCTTTACAACACAACAAATAGTGATTCAACCATCAACCAAATTGTTCATGTTGAATTTGATTCTTTCTCTAATCAAGAATGGGATCCTCCATTTGAACATGTGGGTATAAATGTTAACTCCATTGCTTCTTCTAATTACACTCGTTGGAATGCTAGTTTACATAGTGAAGATATTGCTGATGTGTGGATCTCTTACAATTCAAGTACCAAAAACTTGAGTGTTCGGTGGAAATATCAAAATGGGTCAAATTCTTTTGAGAATTCAACTCTAAGTTATCAAATTGATCTCATGAAGGTTCTTCCTCAATGGGCTACAATAGGACTTTCAGCTGCAACTGGCATGTATGTAGAGAGACACACATTATTTTCATGGGAATTCAATTCCACCTTGGATATAAATCAAGTAAGTGAAGATAATGGGCATAAAGTTGAAGTAATTGTGGGTGTGACTGTTTCAATTGGAGTTTCAATTCTCATGGCAATTGTAGCCTTTGTAGTACTTTGGATATTGAAACAAAAGAAAAGAAAATCAGAGGAAGAAAAGGCTGAAGAGGTCAACTTGACATCCATTAATGATGATTTGGAAAGAGGGGCCGGACCTAGAAGGTTTTCTCATAAGCTTCTTGCCATAGCTACCAACAACTTCTCCAAAGAAAGGAAGCTTGGTCAAGGAGGATTTGGAGCAGTGTATAGAGGGTATATACCAGACATAGATTTGGCAGTGGCTGTGAAGAAAATTTCTAGGGGTTCAAGACAGGGGAGAAAAGAGTATATAACCGAGGTAAAGATCATTAGTCGGCTTCGTCATCGAAATTTGGTGCAACTCATTGGTTGGTGTCACGATAAAGGTGAGTTCTTGTTGGTTTATGAATTCATGCCTAATGGAAGTCTTGATTCTCATCTTTTTGGCAAGAGACCCCCTCTTGCATGGACTGTGAGATACAAGATTGCTTTAGGTTTAGCTTCTGCTTTACTATATCTTCACGAGGAAGGAGAACAGTGTGTGGTTCATAGAGATATTAAATCTAGTAATGTCATGTTAGATTCAAGCTTCAACGTCAAGCTTGGAGATTTTGGGTTAGCTCGATTAATGGACCATGAGTTGGGGGCTCAAACAACTGGGTTAGTTGGAACTTTAGGCTATTTAGCTCCTGAATACATAAGCACAGGTAGAGCTAGCAAAGAGTCAGATGTGTTTAGTTTTGGAGTTGTTGCTTTGGAGATTGCAACAGGAAGAATGTCGAGAAACTCCATGGAAATGGAATCTCATAAGGGCTTGGTAGAGTGGGTTTGGGATCTTCACGGGAATGGAAAGCTTTTAATGGGAATGGATGAGAAATTGGTGGAATCGGATTATGAGAAAAAACAAGTAGAATGTTTAATGGTCGTTGGACTTTGGAGTGCTTATCCAGATCCTCATATAAGACCTTCAATAAGACAAGTGATACAAGTTCTTAATTTTGAAACAACAATGCCAAACCTTCCAAGTAAAATGCCTATTGCTGTGTATCATCCTCCTTCCACATCAATGAGCTCAAATGAACCAGTAATTACTTCAAGTCTTGATGTGGGTCGTTGA 1974 38.3 MATSSNAFPISNHLLFILFLLSFLTPTIDSISFKIDRFKTNESNTVYQGDAIPSVGAIELNNVDYLCRVGWVIYKDIVPIWDSKTGQTTDFTTHFTFLIDTRNAQNYGHGIAFFLAPIGFQIPPNSAGGFLGLYNTTNSDSTINQIVHVEFDSFSNQEWDPPFEHVGINVNSIASSNYTRWNASLHSEDIADVWISYNSSTKNLSVRWKYQNGSNSFENSTLSYQIDLMKVLPQWATIGLSAATGMYVERHTLFSWEFNSTLDINQVSEDNGHKVEVIVGVTVSIGVSILMAIVAFVVLWILKQKKRKSEEEKAEEVNLTSINDDLERGAGPRRFSHKLLAIATNNFSKERKLGQGGFGAVYRGYIPDIDLAVAVKKISRGSRQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMPNGSLDSHLFGKRPPLAWTVRYKIALGLASALLYLHEEGEQCVVHRDIKSSNVMLDSSFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRNSMEMESHKGLVEWVWDLHGNGKLLMGMDEKLVESDYEKKQVECLMVVGLWSAYPDPHIRPSIRQVIQVLNFETTMPNLPSKMPIAVYHPPSTSMSSNEPVITSSLDVGR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5949212 5951252 - MELO3C021873.2.1 Cme11g00560 341223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00560 657 SUPERFAMILY Protein kinase-like (PK-like) 331 640 IPR011009 -
Cme11g00560 657 ProSitePatterns Protein kinases ATP-binding region signature. 353 377 IPR017441 GO:0005524
Cme11g00560 657 MobiDBLite consensus disorder prediction 637 657 - -
Cme11g00560 657 CDD STKc_IRAK 353 618 - -
Cme11g00560 657 Pfam Legume lectin domain 31 270 IPR001220 GO:0030246
Cme11g00560 657 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 18 655 - -
Cme11g00560 657 Pfam Protein kinase domain 347 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00560 657 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00560 657 SMART serkin_6 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00560 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cme11g00560 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
Cme11g00560 657 PANTHER - 18 655 - -
Cme11g00560 657 Gene3D - 28 277 - -
Cme11g00560 657 Gene3D Transferase(Phosphotransferase) domain 1 424 639 - -
Cme11g00560 657 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246
Cme11g00560 657 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01717 Cme-Chr6:19380989 Cme11g00560 Cme-Chr11:5949212 0 dispersed
Cme11g00548 Cme-Chr11:5787434 Cme11g00560 Cme-Chr11:5949212 0 dispersed
Cme11g00556 Cme-Chr11:5890943 Cme11g00560 Cme-Chr11:5949212 0 dispersed
Cme11g00558 Cme-Chr11:5919793 Cme11g00560 Cme-Chr11:5949212 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65235 PF00069 Pkinase 4.10E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00560 - - csv:101203101 1229.93