Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00588 ATGTTGATTATTCAGAAACCTGGATGGAGAAAGTTTGTATCACATGTTGGACCTGGCTTTCTCGTCTCATTAGCTTACCTTGATCCTGGCAACCTGGAAACGGACTTGCAGGCGGGAGCTAATCACGGGTTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACATCTATCGGAAGTGTGCAAAGCCGAATATCCAATATTTGTGAAGTATTGTCTTTGGTTGTTAGCTGAAGTTGCTGTAATAGCAGCCGATATTCCAGAAGTGATAGGAACGGCCTTCGCTCTGAATATTCTATTCCATATTCCTGTTTGGGCAGGAGTACTCCTCACCGGTTTAAGTACCCTTTTGCTTCTTGGTCTCCAAAGATATGGGGCAAGGAAGCTAGAATTGTTGATAGCAATATTAGTGTTCGTAATGGCGGCGTGTTTCTTCGGAGAAATGAGCTACGTGAAGCCTCCAGCGAGCAGTGTTTTGAAAGGAATGTTTGTTCCAAAGCTCAAAGGCGAAGGAGCCACCGCCGACGCCATTGCTCTTCTGGGCGCCCTCGTTATGCCGCATAACCTGTTTCTTCATTCCGCTCTTGTGCTTTCAAGGAAAGTCCCCAATTCCGTCCGCGGTATCAACGACGCTTGTAGGTACTTCCTAATAGAGAGCGGAATTGCATTGTTTATAGCATTTTTAATAAACGTCGCCGTTGTTTCTGTTTCCGGCACCGTCTGTACTGTCGGAAATGTCGCCCAAACTACCGCCGATCAATGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAATGTATTGGGAAAATCAAGCTCCACTATTTACGCCATAGCGCTATTTGCATCGGGACAGAGCTCCAGCATCACTGGCACTTATGCCGGTCAGTTCATTATGCAGGGATTTTTGGACTTGAAAATGAAAACATGGGCAAGAAATCTAATGACAAGGTCCATTGCAATAACGCCAAGTCTTATCGTATCCATCATCGGCGGTCCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCAATGATCCTTTCCTTCGAGCTTCCGTTTGCTCTAATTCCACTACTCAAATTCAGTAGCAGCAGCACCAAGATGGGCCCCCACAAGAACTCCATATACATCATTGTAATCTCATGGATATTGGGCCTCGCAATCATCGGCATCAACATCTATTATCTCAGTACGGCCTTCGTGGACTGGCTAATTCACAATAATTTACACAAAGTTGCAAATGTTTTCATCGGGATCGCTGTGTTTCCCTTAATGGCTGCCTACATTGGTGCCGTTATTTACCTAATGTTTCGAAAAGACAGGGTCGTCACTTACATTGAACCCGAGAAGGATGATGCTATGGCCCAAGCCCATTTGGAAACTGGGCTTAATAATTCTTTTGGGCCTCGTGACGTCACTCCAGTGCCTTTCAGAGAGGATTTGGCCCATATTCAACTACCAGAGTAG 1527 45.97 MLIIQKPGWRKFVSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFVMAACFFGEMSYVKPPASSVLKGMFVPKLKGEGATADAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGIALFIAFLINVAVVSVSGTVCTVGNVAQTTADQCSDITLNSASFLLQNVLGKSSSTIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYIIVISWILGLAIIGINIYYLSTAFVDWLIHNNLHKVANVFIGIAVFPLMAAYIGAVIYLMFRKDRVVTYIEPEKDDAMAQAHLETGLNNSFGPRDVTPVPFREDLAHIQLPE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6597283 6603106 + MELO3C021848.2.1 Cme11g00588 341251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00588 508 Pfam Natural resistance-associated macrophage protein 33 394 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PANTHER METAL TRANSPORTER NRAMP5 4 508 - -
Cme11g00588 508 Hamap Divalent metal cation transporter MntH [mntH]. 4 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 10 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 4 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 304 323 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 144 165 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 91 117 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 119 138 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 364 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 332 349 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cme11g00588 508 PRINTS Natural resistance-associated macrophage protein signature 194 217 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00518 Cme-Chr3:7727087 Cme11g00588 Cme-Chr11:6597283 0 dispersed
Cme04g01729 Cme-Chr4:24840362 Cme11g00588 Cme-Chr11:6597283 4.17E-13 dispersed
Cme08g02300 Cme-Chr8:29992164 Cme11g00588 Cme-Chr11:6597283 1.21E-36 dispersed
Cme11g00588 Cme-Chr11:6597283 Cme11g00745 Cme-Chr11:9170885 3.03E-109 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00588 K21398 - csv:101219356 936.791