Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00619 ATGGACACTCTCTTTGTCCCCATAACCTTCTCCGAACTTCCTCACCCTTTACTCACCTCCAACACTAACGCCGGCTCTCAACCGAGGATTGGACCTGTTTCTCGCTTCTCGCCGCTTTCTTCTCTAATTCACCTCAACCGCTTTCCCATTTGCTTTAAGAAGCTTTCCTATCCTCGCTTCGGTCACTTCCGTTGCGCCGCCGAGGCCTCCGATCACCGACGCGGTCACCATCACGGCCATCATCACCACCACCATGGTTGCCAGCACCATTGCAGTGGTGACAGTGATCGGGTGGAGCTGACTGGAACTCAGAAGGCGTTCGTTCGATTTGCCGAAGCTATTAGATGGACGGACTTGGCGAATTATTTGAGAGAGCATCTACACATGTGTTGCGGTTCTGCTGCTTTGTTTGTGACTGCGGCTGCTTTTCCTTATTTGGTGCCTAAACCCGCTGTGAAGCCTTTACAGAATGTTTTCATTGCAGTTGCTTTCCCATTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCAGCCTTTGCATCAATATTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCATATCGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTCGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGCTGTGCTACAATCACTGTCGAGCACTTGACAGGAGAAGTGAAACCGTTGCAAATTAAGGTTGGGGAAAGAGTTCCAGGTGGAGCAAGAAACTTGGATGGTAGGATCATAGTGAAGGCCACAAAAACATGGGAAGAGTCAACGCTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTTGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTTTTATCTGTAGCTGTTGCCCTCATTGGTCCATTATTGTTCAAGTGGCCATTTATATGCACGCCAGGTTTCAGAGGATCAGTTTATAGAGCACTTGGGCTTATGGTAGCTGCATCACCATGTGCACTGGCAGCAGCGCCATTGGCATATGCTATTGCGATAAGCTCCTGCGCGAGAAAGGGGATACTCCTGAAAGGTGGACACGTGCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACCGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGTGATAAATCACAGTTTGCTTCCTGTTGCATACCAAGCTGCGAAAAAGAAGCCCTTGCAGTGGCAGCTGCCATGGAAAAGGGTACAACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCGGTTGAAAGTACCGAGTATTTCCCTGGAAGAGGTCTCATAGCGACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTTTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCAAGGATGATCAAGGACGCTGTTAGAGCATCAACATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTGATTCACCTTGAGGATCAACCTCGACCTGGAGTCATAGATGCAATAGCAGAACTACAACATTTGGGAAAACTACGAGTTATGATGTTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCAAATGCTGTGGGCATAAATGAAGTTTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAAATGGGGGGTGGCCTGATCATGGTAGGCGAAGGGATAAATGATGCACCTGCACTTGCGGCTGCTACTGTAGGAATAGTTCTTGCTCATCGTGCAAGTGCCACTGCTACAGCTGTCGCAGATGTTCTACTTCTTCAGGACAGTATTTCTGGTGTACCTTTCTGCATTGCAAAATCTCGTCAGACAACTTCACTGATCAAGCAAAATGTGACCCTTGCCTTGACATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTGCACGAGGGTGGCACTCTCCTAGTTTGCCTGAACTCAGTACGTGCTCTAAATCACCCCTCATGGTCATGGAAACAAGATTTTCAAAACCTGATACACAACGCCAGATCTAAACTTAACACGACACCCGAAACTAGCTCTGGGACCATCCAAACTGCAACTTCATAG 2472 45.91 MDTLFVPITFSELPHPLLTSNTNAGSQPRIGPVSRFSPLSSLIHLNRFPICFKKLSYPRFGHFRCAAEASDHRRGHHHGHHHHHHGCQHHCSGDSDRVELTGTQKAFVRFAEAIRWTDLANYLREHLHMCCGSAALFVTAAAFPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSQFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESTEYFPGRGLIATLHGIKSGIGGKLRKASFGSVDFITSFCKSENESRMIKDAVRASTYGSEFVHAALSVDQKVTLIHLEDQPRPGVIDAIAELQHLGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGVPFCIAKSRQTTSLIKQNVTLALTSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNHPSWSWKQDFQNLIHNARSKLNTTPETSSGTIQTATS 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7094695 7105295 + MELO3C024722.2.1 Cme11g00619 341282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00619 823 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cme11g00619 823 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Cme11g00619 823 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Cme11g00619 823 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Cme11g00619 823 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Cme11g00619 823 Gene3D - 225 350 - -
Cme11g00619 823 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 186 783 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cme11g00619 823 Pfam E1-E2 ATPase 259 432 - -
Cme11g00619 823 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 261 473 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme11g00619 823 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 587 761 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme11g00619 823 SFLD p-type atpase 434 734 IPR044492 -
Cme11g00619 823 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cme11g00619 823 Gene3D - 463 612 IPR023299 GO:0000166
Cme11g00619 823 Gene3D - 445 732 IPR023214 -
Cme11g00619 823 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 68 819 - -
Cme11g00619 823 SUPERFAMILY HAD-like 450 781 IPR036412 -
Cme11g00619 823 Pfam haloacid dehalogenase-like hydrolase 450 694 - -
Cme11g00619 823 SFLD C1.7: P-type atpase like 434 734 - -
Cme11g00619 823 SUPERFAMILY Calcium ATPase, transduction domain A 260 345 IPR008250 -
Cme11g00619 823 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 765 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00619 Cme-Chr11:7094695 Cme11g00715 Cme-Chr11:8588898 0 dispersed
Cme11g00619 Cme-Chr11:7094695 Cme03g01691 Cme-Chr3:25617688 7.02E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00619 K01534 - csv:101221102 1513.82