Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00620 ATGATTTCCCTAGCCCCAGTATGCGACCCCCAACCACCCAATAATGTCTCCTCCGATTTCTCATCCTCTCCCCCGCCCTCCACGCCGGCCACCCATGTTTTCCGATCCAAATTACCCGACATTCCTATCCCCGACCATCTCCCTCTTCACAGTTACTGCTTCCAGAAACTCTCCCAAGTTTCCGACCGCCCATGTTTGATCGTCGGCTCCACCGGAAAATCTTATTCCTACTCCGAAACCCACCTCTTTTCCCGCAAAGCCGCCGCCACTTTCTCTAAACTTGGTGTTCAGAGAGGGGATGTTATTATGATTCTCCTCCATAATTCTCCTGAATTTATTTTCTCTTTTATGGGTTCCTCCATGCTCGGCGCCATCGCTACCACCGCCAATCCTTACTACACGGGGGCCGAGATTTCTAAGCAGTTGAAGGCCTCCGGTGCTAAATTCGTTGTTACTTACTCCCGATGCGTTGATAAGTTACGAGAATGTGGTGAAGTTCTCACTATTGTCACCGTGGATGACCCGCCGGAGAATTGTCTGAGCTTCTCGATGGTTTACGACGCCAATGAGAACGATGTCCCGTTTGTGGAGATTGATACGAACGATGCCGTTTCCCTACCGTTCTCCTCCGGCACGACCGGGCTCCCCAAGGGTGTGATTTTGACTCATAAGAACATGGTGTCGAGTGTGGCTCAACAGGTGGATGGAGAAAACCCGAACCTATATTTAAAAAGAAACGACATAGTTTTATGCGTGTTACCAATGTTTCATATATTCTCATTGAGTAGCATAGTTTTGATATCAATCAGATCCGGGGCAGCGTTGCTTTTGATGGAGAAATTTGAGATCGAGTCATTGCTACGACTAGTAGAGAGACACAAGGTGACGGTGGCAACGGTGGTGCCGCCGCTCGTGGTGTCGCTAGTGAAGAACCCGAAGGTTGCAGATTTCAACTTGAGCTCCATTCGATTAGTGCTTTCCGGAGCAGCACCGTTGAGAAAGGAGCTGGAGGAGGCTCTCATGGAAAGGCTTCCTCAAGCCATTTTTGGTCAGGGTTATGGTATGACGGAAGCGGGTCCCGTGCTGAGCATGTGCTCGGCTTTTGCAAAGGAGCCACCAATGCCAACAAAATCTGGCTCCTGCGGCCGAGTTGTTAGAAACTCGGAGCTTAAAGTCGTTGACCCACTAACCGGTGCCTCACTCACTTATAATCAACCCGGAGAAATTTGTGTTCGAGGCCCCCAAGTTATGAAAGGATATTTGAATGACCCGGTGTCCACGTCATTGACTGTCGATGTGGAGGGTTGGCTTCATACGGGTGACATTGGTTACGTTGACGATGAAGAAGAAATTTTTATTGTTGATAGAGTTAAAGAGATTATTAAATTTAAAGGTTTTCAGGTGGCACCGGCAGAGTTAGAGGCTCTTCTTGTAACCCATACATCTATCGTTGATGCTGCTGTTGTCCCGCAAAATGATGATGTTGCTGGTGAAGTTCCAGTAGCTTTCGTAGTTCCATCAACTCAGAATGGACTTACAGAGGAATCAGTAAAAGAATTCATAGCAAAGCAGGTTGTGTTCTACAAGAGATTGCACAAAGTATATTTTGTGAAGACCATTCCAAAATCACCTTCTGGAAAGACCTTGAGAAAGGAACTCAAAGCCAAACTCTCATAA 1677 47.47 MISLAPVCDPQPPNNVSSDFSSSPPPSTPATHVFRSKLPDIPIPDHLPLHSYCFQKLSQVSDRPCLIVGSTGKSYSYSETHLFSRKAAATFSKLGVQRGDVIMILLHNSPEFIFSFMGSSMLGAIATTANPYYTGAEISKQLKASGAKFVVTYSRCVDKLRECGEVLTIVTVDDPPENCLSFSMVYDANENDVPFVEIDTNDAVSLPFSSGTTGLPKGVILTHKNMVSSVAQQVDGENPNLYLKRNDIVLCVLPMFHIFSLSSIVLISIRSGAALLLMEKFEIESLLRLVERHKVTVATVVPPLVVSLVKNPKVADFNLSSIRLVLSGAAPLRKELEEALMERLPQAIFGQGYGMTEAGPVLSMCSAFAKEPPMPTKSGSCGRVVRNSELKVVDPLTGASLTYNQPGEICVRGPQVMKGYLNDPVSTSLTVDVEGWLHTGDIGYVDDEEEIFIVDRVKEIIKFKGFQVAPAELEALLVTHTSIVDAAVVPQNDDVAGEVPVAFVVPSTQNGLTEESVKEFIAKQVVFYKRLHKVYFVKTIPKSPSGKTLRKELKAKLS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7131535 7136739 + MELO3C024724.2.1 Cme11g00620 341283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00620 558 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
Cme11g00620 558 SUPERFAMILY Acetyl-CoA synthetase-like 29 556 - -
Cme11g00620 558 CDD 4CL 43 553 - -
Cme11g00620 558 Gene3D - 27 457 IPR042099 -
Cme11g00620 558 Pfam AMP-binding enzyme C-terminal domain 472 547 IPR025110 -
Cme11g00620 558 Pfam AMP-binding enzyme 58 463 IPR000873 -
Cme11g00620 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 32 556 - -
Cme11g00620 558 MobiDBLite consensus disorder prediction 10 29 - -
Cme11g00620 558 Gene3D - 458 558 IPR045851 -
Cme11g00620 558 MobiDBLite consensus disorder prediction 1 29 - -
Cme11g00620 558 PANTHER 4-COUMARATE--COA LIGASE 3 32 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01757 Cme-Chr4:25168974 Cme11g00620 Cme-Chr11:7131535 0 dispersed
Cme11g00620 Cme-Chr11:7131535 Cme12g00392 Cme-Chr12:5642969 3.24E-130 dispersed
Cme11g00620 Cme-Chr11:7131535 Cme05g01441 Cme-Chr5:23772562 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00620 K01904 - csv:101221344 993.801