Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00698 | ATGGCGGTGGAGCTCCTCACCGGCTTCACCAACCCTCCTCAACTCTCTTCTCGATCCCCCATGGACCAAGACTCCGCCGTTCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCATCACATTACTCTCTCATTCTCCCCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCCGCAAGGCCATATCTCTCCTCGGCCGCTCCTCTAGAACTGGCCATGCCCGATTCCGCCGTGCCCCTTTAGATTCCTCTAAAATCTATAACGCTACCCCCATTCAACAAATCCCTCCGCCCTCCCTCGACCGCCTCGATTCTGCCACCACCATCAATTTTTCTTACTCCGCTGCTCCTACTTCCTCCTTCTTAACCTCCCTTCCTGCTTCCGATTCAGAAATTAAGCTCCAACATCAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTGGGCTCTGGGAAATGCGCTGGATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAAAGAAAATTGAGGTTGAAAAGGGTGGTGAGAGTACCAGCAATAAGTTCTAAGAACGCTGATATTCCTCCGGATGATTATTCGTGGAGGAAGTATGGGCAAAAGCCGATAAAGGGTTCTCCATATCCGAGAGGTTACTATAAGTGTAGCAGTTTAAGAGGATGTCCGGCAAGAAAACACGTCGAGAGAGCGTCAGATGATCCATCTATGTTAATAGTAACGTACGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA | 882 | 49.77 | MAVELLTGFTNPPQLSSRSPMDQDSAVQEAASGLDTLKKLITLLSHSPPSNLDSDCQAVANAAVSHFRKAISLLGRSSRTGHARFRRAPLDSSKIYNATPIQQIPPPSLDRLDSATTINFSYSAAPTSSFLTSLPASDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKLRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8243822 | 8245576 | - | MELO3C024787.2.1 | Cme11g00698 | 341361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00698 | 293 | Pfam | WRKY DNA -binding domain | 222 | 278 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00698 | 293 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 20 | 292 | - | - | |
Cme11g00698 | 293 | ProSiteProfiles | WRKY domain profile. | 215 | 281 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00698 | 293 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cme11g00698 | 293 | SUPERFAMILY | WRKY DNA-binding domain | 216 | 280 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00698 | 293 | SMART | WRKY_cls | 220 | 280 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00698 | 293 | Pfam | Plant zinc cluster domain | 172 | 218 | IPR018872 | - | |
Cme11g00698 | 293 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 20 | 292 | IPR044810 | GO:0003700 | |
Cme11g00698 | 293 | MobiDBLite | consensus disorder prediction | 9 | 30 | - | - | |
Cme11g00698 | 293 | Gene3D | WRKY domain | 206 | 281 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01624 | Cme-Chr2:23403264 | Cme11g00698 | Cme-Chr11:8243822 | 8.50E-65 | dispersed | |
Cme04g00334 | Cme-Chr4:2660995 | Cme11g00698 | Cme-Chr11:8243822 | 1.31E-12 | dispersed | |
Cme05g00464 | Cme-Chr5:4242020 | Cme11g00698 | Cme-Chr11:8243822 | 4.92E-51 | dispersed | |
Cme08g00590 | Cme-Chr8:3758983 | Cme11g00698 | Cme-Chr11:8243822 | 2.18E-107 | dispersed | |
Cme10g01263 | Cme-Chr10:13430072 | Cme11g00698 | Cme-Chr11:8243822 | 2.75E-22 | dispersed | |
Cme11g00698 | Cme-Chr11:8243822 | Cme06g00151 | Cme-Chr6:903897 | 2.07E-28 | dispersed | |
Cme06g00109 | Cme-Chr6:694783 | Cme11g00698 | Cme-Chr11:8243822 | 1.14E-16 | transposed | |
Cme11g00698 | Cme-Chr11:8243822 | Cme07g00334 | Cme-Chr7:2126230 | 1.03E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42158 | PF03106 | WRKY | 2.60E-26 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00698 | - | - | csv:101209733 | 562.377 |