Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00715 ATGGGAACTCTCTCCTTCCCAATTCCCTCCTCAAAATCACATCTTTTATCCAATCCCAACCCAGTTCCTCTTTTTAGGCACCCTTTTCTTCAATCATCTTTCTCATCTTCTCCATTTCCCTCTCGTAATTTCCCTATTCTTCGTTTACGGCGGCGTGTTCTCTGTTCCGCTGCGGCAGCTGGTCGGTCGAATCACGATGACCACCACCATGTTCATGATCACAACCATGGTCACCACCACCACCACCACCACCACCACCACCACCACCGCCACCATGGTGATCATGATGTTGAGTTGTCTGGGCCTCAGAAAGCGGTGATTGGATTTGCTAAAGCCACTAGGTGGACGGACTTGGCTAAATATTTGAGGGAAAGCTTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTGGCTGCTGCTGTTTGCCCTTATTTGGTGCCCAAACCCATTGTGAAGCCTTTGCAAATTGCTTTCATTGTCATTGGTTTTCCTTTAGTTGGGGTCTCCTCGGCACTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTGAACATCCATGTACTTATGGCCCTTGCAGCCTTTGCTTCCATCTTTATGGGAAATGCCTTGGAAGGAGGACTACTACTTGCCATGTTTAACTTGTCTCACATTGCCGAAGAGTATTTTACAAGTCGTGCGATGATTGACGTCAAAGAGTTGAAGGAAAACTATCCAGACTTTGCCCTTGTTTTAGATACAAATGATGGTGAAGTTCCAAATATTACAGATTTGTCCTACCAAAAGGTTCCTGTCCAAGATGTAGAAGTGGACTCCTATATATTAGTTGGAGCTGGTGAGTTTGTGCCTGTAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACCGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTCTGAGTCGTATAGTGAACTTGACTGAAGAGGCACAACTAAATAAACCAAGACTTCAGCGGTGGCTTGATGAATTTGGTGAACATTATAGCAAAGCAGTTGTAGTATTGGCCACTACTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACTTCAGCTTGTAGAGGATCAGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCTGTTGCACCTTTGGCTTATGCCATTGCAATAAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGACGTGTATTAGATGCTTTAGCTGCTTGTCATACTATAGCATTTGATAAAACTGGGACATTAACCACTGGGGGCCTTTTTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTAGGAGAAAACAAATCAGACTTTGGTTCATGTTGTATTCCCTGCTGTGAAGACGAAGCTCTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACTCACCCCATTGGGAGAGCTGTGGTCGGCCACAGTATGGGAAAAGTCCTCCCTTCCTTTTCTGTCCAGAGTTTGGAATATTTTCCGGGTAGAGGACTTGTCGCAACTCTGCATGGTACTGAGTCAGGTGGGAAACTATTGAAAGCATCTCTTGGTTCCTTAGATTTCATCACTTCATGCTACAAATCTGGAACCAAATCAAAAGAGATCAAAGAAGCTGCAAACACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATATCTGAATTAACAGATAGAGCAAGACTTCATGTAATGATGTTGACCGGAGATCATGAGTCAAGTGCACGAAGAGTAGCAAATGCAGTGGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGATAAACTTAGTCACGTGAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGCGAAGGGATTAATGATGCACCTGCACTTGCTGCTGCTACCGTGGGCATAGTGCTTGCTCAACGTGCTAGTGCAACTGCCATAGCTGTGGCAGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCTCTTGTTAAACAGAATGCTAGTCTTGCCTTGTTTTTTATATTTGTGGCTTCTCTTCCTGCTGTTTTAGGGTTTCTTCCCTTATGGTTAACGGTACTTCTACACGAAGGTGGTACTCTTCTAGTTTGCCTCAATTCCATACGCGCTCTGAATAATCCTAGTTGGTCCTGGTCCTGGGGGCAAGACTTGAAGCAATTCCTAATGGAGCTGAAATTTAAGGGATCGCAGCCAAGGCTTAATACCAGCTCTACCACTGTACAATCTTCCCCTGTATAG 2472 44.58 MGTLSFPIPSSKSHLLSNPNPVPLFRHPFLQSSFSSSPFPSRNFPILRLRRRVLCSAAAAGRSNHDDHHHVHDHNHGHHHHHHHHHHHHRHHGDHDVELSGPQKAVIGFAKATRWTDLAKYLRESLQLCCCSMALFVAAAVCPYLVPKPIVKPLQIAFIVIGFPLVGVSSALDALTDISGGKVNIHVLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKELKENYPDFALVLDTNDGEVPNITDLSYQKVPVQDVEVDSYILVGAGEFVPVDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLATTIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALAACHTIAFDKTGTLTTGGLFFKAIEPIYGHEVGENKSDFGSCCIPCCEDEALAVAAAMEKGTTHPIGRAVVGHSMGKVLPSFSVQSLEYFPGRGLVATLHGTESGGKLLKASLGSLDFITSCYKSGTKSKEIKEAANTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVISELTDRARLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFFIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWSWGQDLKQFLMELKFKGSQPRLNTSSTTVQSSPV 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8588898 8600043 - MELO3C024800.2.1 Cme11g00715 341378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00715 823 SFLD C1.7: P-type atpase like 433 731 - -
Cme11g00715 823 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 185 780 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cme11g00715 823 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Cme11g00715 823 Gene3D - 462 609 IPR023299 GO:0000166
Cme11g00715 823 Pfam E1-E2 ATPase 255 431 - -
Cme11g00715 823 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 56 818 - -
Cme11g00715 823 Gene3D - 444 729 IPR023214 -
Cme11g00715 823 SUPERFAMILY Calcium ATPase, transmembrane domain M 187 737 IPR023298 -
Cme11g00715 823 MobiDBLite consensus disorder prediction 63 97 - -
Cme11g00715 823 Gene3D - 223 349 - -
Cme11g00715 823 SFLD p-type atpase 433 731 IPR044492 -
Cme11g00715 823 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Cme11g00715 823 PRINTS P-type cation-transporting ATPase superfamily signature 624 634 - -
Cme11g00715 823 PRINTS P-type cation-transporting ATPase superfamily signature 678 697 - -
Cme11g00715 823 PRINTS P-type cation-transporting ATPase superfamily signature 702 714 - -
Cme11g00715 823 CDD P-type_ATPase_HM 129 780 - -
Cme11g00715 823 Pfam haloacid dehalogenase-like hydrolase 449 691 - -
Cme11g00715 823 SUPERFAMILY Calcium ATPase, transduction domain A 254 344 IPR008250 -
Cme11g00715 823 SUPERFAMILY HAD-like 449 778 IPR036412 -
Cme11g00715 823 MobiDBLite consensus disorder prediction 72 92 - -
Cme11g00715 823 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 580 758 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme11g00715 823 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 258 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00342 Cme-Chr11:3550683 Cme11g00715 Cme-Chr11:8588898 7.18E-47 dispersed
Cme11g00619 Cme-Chr11:7094695 Cme11g00715 Cme-Chr11:8588898 0 dispersed
Cme11g00715 Cme-Chr11:8588898 Cme09g01069 Cme-Chr9:14953029 1.28E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00715 K01534 - jre:109009121 1117.45