Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00758 | ATGGACTACCCTCCACCAAACTGGAATTGGCTCTTCGATTGCTCTACAATGGATGATCTCGCCGTCGTCGACCCTCGATTCTCGCCCCCACAGTCCATCAGTTTCTCCTGGTCCAATCCCTCGATCAGTTTTGTATCTAAAGACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCACAAAGGAAGTGGGTCGGAAACGGAGTTTGATAAGGATCCAAACTCCTGTTAACAGACTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGCGATGCTATCAGAATGATGACTGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCAAAGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAGAGCAGTGAACACTCGAGCAGCTGATGTTCAGCATCCTCCCCCTACACTATCAGCTGCATTTACAGCACAAGGGCAAGCGGCTGGTAACAAATTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCATGTGCTTCGCCCACCAGTTGCTTAA | 750 | 46.93 | MDYPPPNWNWLFDCSTMDDLAVVDPRFSPPQSISFSWSNPSISFVSKDSLEVDCSYEDLDSTKEVGRKRSLIRIQTPVNRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKTDKVAILSDAIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTRAADVQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9430545 | 9434055 | + | MELO3C019226.2.1 | Cme11g00758 | 341421 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00758 | 249 | CDD | bHLH_AtILR3_like | 92 | 167 | - | - | |
Cme11g00758 | 249 | PANTHER | BHLH TRANSCRIPTION FACTOR | 6 | 249 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Cme11g00758 | 249 | Gene3D | - | 81 | 136 | IPR036638 | GO:0046983 | |
Cme11g00758 | 249 | Coils | Coil | 135 | 190 | - | - | |
Cme11g00758 | 249 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 137 | 191 | - | - | |
Cme11g00758 | 249 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 87 | 138 | IPR011598 | GO:0046983 | |
Cme11g00758 | 249 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 92 | 163 | IPR036638 | GO:0046983 | |
Cme11g00758 | 249 | PANTHER | BHLH DOMAIN CLASS TRANSCRIPTION FACTOR | 6 | 249 | - | - | |
Cme11g00758 | 249 | SMART | finulus | 93 | 144 | IPR011598 | GO:0046983 | |
Cme11g00758 | 249 | Pfam | Helix-loop-helix DNA-binding domain | 90 | 139 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00805 | Cme-Chr4:10002629 | Cme11g00758 | Cme-Chr11:9430545 | 6.06E-71 | dispersed | |
Cme04g00808 | Cme-Chr4:10064076 | Cme11g00758 | Cme-Chr11:9430545 | 2.53E-85 | dispersed | |
Cme11g00758 | Cme-Chr11:9430545 | Cme04g00117 | Cme-Chr4:902979 | 2.15E-06 | dispersed | |
Cme02g01892 | Cme-Chr2:25430915 | Cme11g00758 | Cme-Chr11:9430545 | 1.93E-14 | transposed | |
Cme06g00505 | Cme-Chr6:3187554 | Cme11g00758 | Cme-Chr11:9430545 | 7.89E-45 | transposed | |
Cme08g00928 | Cme-Chr8:6123063 | Cme11g00758 | Cme-Chr11:9430545 | 5.59E-20 | transposed | |
Cme11g00758 | Cme-Chr11:9430545 | Cme12g01447 | Cme-Chr12:22226137 | 2.80E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42160 | PF00010 | HLH | 3.30E-10 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00758 | - | - | csv:101212433 | 452.595 |