Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00758 ATGGACTACCCTCCACCAAACTGGAATTGGCTCTTCGATTGCTCTACAATGGATGATCTCGCCGTCGTCGACCCTCGATTCTCGCCCCCACAGTCCATCAGTTTCTCCTGGTCCAATCCCTCGATCAGTTTTGTATCTAAAGACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCACAAAGGAAGTGGGTCGGAAACGGAGTTTGATAAGGATCCAAACTCCTGTTAACAGACTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGCGATGCTATCAGAATGATGACTGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCAAAGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAGAGCAGTGAACACTCGAGCAGCTGATGTTCAGCATCCTCCCCCTACACTATCAGCTGCATTTACAGCACAAGGGCAAGCGGCTGGTAACAAATTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCATGTGCTTCGCCCACCAGTTGCTTAA 750 46.93 MDYPPPNWNWLFDCSTMDDLAVVDPRFSPPQSISFSWSNPSISFVSKDSLEVDCSYEDLDSTKEVGRKRSLIRIQTPVNRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKTDKVAILSDAIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTRAADVQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9430545 9434055 + MELO3C019226.2.1 Cme11g00758 341421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00758 249 CDD bHLH_AtILR3_like 92 167 - -
Cme11g00758 249 PANTHER BHLH TRANSCRIPTION FACTOR 6 249 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cme11g00758 249 Gene3D - 81 136 IPR036638 GO:0046983
Cme11g00758 249 Coils Coil 135 190 - -
Cme11g00758 249 Gene3D arf6 gtpase in complex with a specific effector, jip4 137 191 - -
Cme11g00758 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 138 IPR011598 GO:0046983
Cme11g00758 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 163 IPR036638 GO:0046983
Cme11g00758 249 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 6 249 - -
Cme11g00758 249 SMART finulus 93 144 IPR011598 GO:0046983
Cme11g00758 249 Pfam Helix-loop-helix DNA-binding domain 90 139 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00805 Cme-Chr4:10002629 Cme11g00758 Cme-Chr11:9430545 6.06E-71 dispersed
Cme04g00808 Cme-Chr4:10064076 Cme11g00758 Cme-Chr11:9430545 2.53E-85 dispersed
Cme11g00758 Cme-Chr11:9430545 Cme04g00117 Cme-Chr4:902979 2.15E-06 dispersed
Cme02g01892 Cme-Chr2:25430915 Cme11g00758 Cme-Chr11:9430545 1.93E-14 transposed
Cme06g00505 Cme-Chr6:3187554 Cme11g00758 Cme-Chr11:9430545 7.89E-45 transposed
Cme08g00928 Cme-Chr8:6123063 Cme11g00758 Cme-Chr11:9430545 5.59E-20 transposed
Cme11g00758 Cme-Chr11:9430545 Cme12g01447 Cme-Chr12:22226137 2.80E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42160 PF00010 HLH 3.30E-10 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00758 - - csv:101212433 452.595