Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00777 ATGAACGATTTGCTTACGATGCAATATAATTGGTTTGTGACATCCAATGTAGCTGTTAGTGTTACGGACTCATTTGTTAGCAATGCCAAAGGTGGGTCTTCTAGAGAAATCGACCTCGAGAAGGGAACTCGAGTTCTGCGAAGCAATTCTGATATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGATAAGCTCTCTGGGCTTCTTATTAAACTGAAGTCTTGGTACCATACATGTCTGTTTTCGCTAAGGGCACTTGTCACTTCAGCTATCAAAAAGCGTATGGAAAAGGATATTGATGAAGTGGGAAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAGGCCTGGGTTCGAGAAGGGAACGGCCATTGACCGAGCAAGAATGAACAATTATATTCTGAATGGCAGTGCGTTAACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACTCTTCGTCAAAGAATTCAAGATGAGTACCGTGAAGTCGTGGAAAGACGAGTGATTACAGTTACGGGTACCAGACCAGATGAGACGACTATTGATCACCTCATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGAACAAATGGGACGAGGACAGGTTATCAGTACCGTGGAAGAAATTCAAGAGCGGCACGATGCAGTTAAAGAGATTGAGAAAAAACTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAATGCCGTCGATCACGTTCGAACAGGAACGGATGCACTCCAAACCGCAAAGAGCTTACAGAAGAGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTTATTGCAATCATAGTCATCCTCTCTGTGCTGAAGCCATGGAAGAAGTGA 978 42.23 MNDLLTMQYNWFVTSNVAVSVTDSFVSNAKGGSSREIDLEKGTRVLRSNSDMGMEAFNKQIQDVEVQVDKLSGLLIKLKSWYHTCLFSLRALVTSAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQRPGFEKGTAIDRARMNNYILNGSALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDETTIDHLIETGNSEQIFQNAFEQMGRGQVISTVEEIQERHDAVKEIEKKLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIGIILLLVIAIIVILSVLKPWKK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9709170 9712564 - MELO3C019244.2.1 Cme11g00777 341440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00777 325 SUPERFAMILY t-snare proteins 51 283 IPR010989 GO:0016020|GO:0016192
Cme11g00777 325 Gene3D - 219 321 - -
Cme11g00777 325 CDD SNARE_syntaxin1-like 227 289 - -
Cme11g00777 325 Pfam Syntaxin 57 262 IPR006011 GO:0016020
Cme11g00777 325 Gene3D - 49 182 - -
Cme11g00777 325 SMART SynN_4 49 179 IPR006011 GO:0016020
Cme11g00777 325 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 23 319 - -
Cme11g00777 325 Pfam SNARE domain 264 316 IPR000727 -
Cme11g00777 325 CDD SynN 54 215 IPR006011 GO:0016020
Cme11g00777 325 Coils Coil 54 74 - -
Cme11g00777 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 228 290 IPR000727 -
Cme11g00777 325 PANTHER SYNTAXIN 23 319 IPR045242 -
Cme11g00777 325 SMART tSNARE_6 223 290 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01796 Cme-Chr4:25668463 Cme11g00777 Cme-Chr11:9709170 3.27E-100 dispersed
Cme04g02317 Cme-Chr4:30097548 Cme11g00777 Cme-Chr11:9709170 2.29E-58 dispersed
Cme11g00777 Cme-Chr11:9709170 Cme12g01397 Cme-Chr12:21851130 1.47E-68 dispersed
Cme11g00777 Cme-Chr11:9709170 Cme08g01151 Cme-Chr8:8134579 1.05E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00777 K08486 - csv:101214355 496.508