Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00781 ATGCCTGCCGGAATTATGACACCGGCCAGAAACATGGGGTCGATGATTGGAAGAAATGGGAATAATAATGTTGCTGGATTTTCCTCTCCTTCTGGACTTCCTTTTTCTCAGCCAAGCATTATGGATGCTCACCTTCTCCCTCTAGACATCCCTCAAAACACTTCTGAAAGCGATCTTGCTCGAATCAGAGATGACGACTTTGACAGTGCTACTAAATCCGGCAGCGACAACAACCATGAGCTCGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGGTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCTTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGAGGCACGAGAATACTCAACTTCGAACTGAAAATGAGAAGCTTAGAGCTGATAACATGAGATATAGAGAAGCCCTAAGCAATGCTTCATGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATATCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTGGTGAACTACCCTTTACTTTCTCCACCAGTCCCATCTCGTCCACTAGAGTTAGGAATGGCCAACTTCGGGCCACAACCCGGCCTGGGAGGAGGAGACATCTACGGCTCCGCCAGCGACCTAATCCGATCCATCAGTGCCCCAACGGAGGCCGATAAACCAATGATCATTGAGCTAGCCGTTGCAGCTATGGAAGAGCTAACTAGAATGGCTCAAATGGGTGAGCCATTGTGGATGACTACACTGGATGGCTCCACCCATATGCTCAATGAAGATGAGTACTTAAGAACTTTTCCAAGAGGTATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCTTCTCGTGAATCGGCTGTTGTCATCATGAACCACATTAACCTAGTCGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGTGTTGCTGGAAATTACAATGGTGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCACTTGTTCCGACTCGGGAAAGCTACTTCGTTAGATATTGTAAGCAGCATGGAGACGGGACGTGGGCGGTGGTGGATGTTTCGTTGGATGATCTACGCCCTACCCCTGGTGTTCGATGTAGACGAAGACCTTCGGGTTGTTTGATCCAGGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCTAAACGCTGGGTTACAACATTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCCACTAACATTCCTACTGGTGATGTTGGAGTAATAACGAATCAAGAAGGGAGAAAGAGTATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACTACTTTGTCGGGTACGGGTGCGGACGACGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCATGGTATTGTCCTTAGTGCCGCAACTTCCTTCTGGCTTCCTGTTCCACCTAAGAGAATCTTCGATTTTCTTCGAGATGAAAACTCTCGCAGTGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATTGCCAACGGCCGCGACACTGGCAACTGCGTATCTCTCCTACGAGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCTTGCAAGAAAGCTGCACAGATCCAACAGCCTCATTCGTGATCTACGCACCAGTCGACGTAGTAGCAATGAACCTCGTCCTAAATGGTGGCGATCCCGACTATGTAGCACTACTCCCCTCAGGGTTTGCCATTCTTCCTGACGGCGGAGGCGGAGAGGGAGTTTCGGGAGGGTCGTTGCTGACGGTTGCATTTCAAATACTGGTGGATTCAGTGCCGACGGCAAAACTGTCACTAGGGTCAGTTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAAAGGATAAAAGCTTCATTATCATGTGAGAATGCATAA 2274 47.23 MPAGIMTPARNMGSMIGRNGNNNVAGFSSPSGLPFSQPSIMDAHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNHELVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMANFGPQPGLGGGDIYGSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTTLDGSTHMLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPHGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDVVAMNLVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9888700 9894646 + MELO3C019250.2.1 Cme11g00781 341444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00781 757 CDD START_ArGLABRA2_like 279 503 - -
Cme11g00781 757 SMART START_1 284 504 IPR002913 GO:0008289
Cme11g00781 757 Pfam Homeodomain 93 149 IPR001356 GO:0003677
Cme11g00781 757 SUPERFAMILY Bet v1-like 275 506 - -
Cme11g00781 757 Pfam START domain 285 504 IPR002913 GO:0008289
Cme11g00781 757 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Cme11g00781 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 48 754 IPR042160 -
Cme11g00781 757 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Cme11g00781 757 MobiDBLite consensus disorder prediction 66 101 - -
Cme11g00781 757 SMART HOX_1 91 154 IPR001356 GO:0003677
Cme11g00781 757 CDD homeodomain 93 151 IPR001356 GO:0003677
Cme11g00781 757 MobiDBLite consensus disorder prediction 66 92 - -
Cme11g00781 757 Gene3D - 80 167 - -
Cme11g00781 757 ProSiteProfiles START domain profile. 275 507 IPR002913 GO:0008289
Cme11g00781 757 Coils Coil 144 176 - -
Cme11g00781 757 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 48 754 - -
Cme11g00781 757 SUPERFAMILY Homeodomain-like 80 150 IPR009057 -
Cme11g00781 757 SUPERFAMILY Bet v1-like 523 749 - -
Cme11g00781 757 Gene3D - 334 503 IPR023393 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00416 Cme11g00781 CCT
Cme01g00416 Cme11g00781 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00844 Cme-Chr4:10640836 Cme11g00781 Cme-Chr11:9888700 1.16E-117 dispersed
Cme04g00956 Cme-Chr4:12834928 Cme11g00781 Cme-Chr11:9888700 2.89E-20 dispersed
Cme06g00978 Cme-Chr6:6946483 Cme11g00781 Cme-Chr11:9888700 0 dispersed
Cme10g00945 Cme-Chr10:7183532 Cme11g00781 Cme-Chr11:9888700 8.56E-23 dispersed
Cme11g00781 Cme-Chr11:9888700 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme08g00088 Cme-Chr8:595852 Cme11g00781 Cme-Chr11:9888700 2.41E-20 transposed
Cme01g00416 Cme-Chr1:2932684 Cme11g00781 Cme-Chr11:9888700 0 wgd
Cme11g00781 Cme-Chr11:9888700 Cme12g01470 Cme-Chr12:22385995 0 wgd
Cme11g00781 Cme-Chr11:9888700 Cme08g00387 Cme-Chr8:2409975 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42164 PF01852 START 3.40E-60 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00781 K09338 - csv:101214763 1497.64