Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00781 ATGCCTGCCGGAATTATGACACCGGCCAGAAACATGGGGTCGATGATTGGAAGAAATGGGAATAATAATGTTGCTGGATTTTCCTCTCCTTCTGGACTTCCTTTTTCTCAGCCAAGCATTATGGATGCTCACCTTCTCCCTCTAGACATCCCTCAAAACACTTCTGAAAGCGATCTTGCTCGAATCAGAGATGACGACTTTGACAGTGCTACTAAATCCGGCAGCGACAACAACCATGAGCTCGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGGTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCTTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGAGGCACGAGAATACTCAACTTCGAACTGAAAATGAGAAGCTTAGAGCTGATAACATGAGATATAGAGAAGCCCTAAGCAATGCTTCATGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATATCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTGGTGAACTACCCTTTACTTTCTCCACCAGTCCCATCTCGTCCACTAGAGTTAGGAATGGCCAACTTCGGGCCACAACCCGGCCTGGGAGGAGGAGACATCTACGGCTCCGCCAGCGACCTAATCCGATCCATCAGTGCCCCAACGGAGGCCGATAAACCAATGATCATTGAGCTAGCCGTTGCAGCTATGGAAGAGCTAACTAGAATGGCTCAAATGGGTGAGCCATTGTGGATGACTACACTGGATGGCTCCACCCATATGCTCAATGAAGATGAGTACTTAAGAACTTTTCCAAGAGGTATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCTTCTCGTGAATCGGCTGTTGTCATCATGAACCACATTAACCTAGTCGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGTGTTGCTGGAAATTACAATGGTGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCACTTGTTCCGACTCGGGAAAGCTACTTCGTTAGATATTGTAAGCAGCATGGAGACGGGACGTGGGCGGTGGTGGATGTTTCGTTGGATGATCTACGCCCTACCCCTGGTGTTCGATGTAGACGAAGACCTTCGGGTTGTTTGATCCAGGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCTAAACGCTGGGTTACAACATTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCCACTAACATTCCTACTGGTGATGTTGGAGTAATAACGAATCAAGAAGGGAGAAAGAGTATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACTACTTTGTCGGGTACGGGTGCGGACGACGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCATGGTATTGTCCTTAGTGCCGCAACTTCCTTCTGGCTTCCTGTTCCACCTAAGAGAATCTTCGATTTTCTTCGAGATGAAAACTCTCGCAGTGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATTGCCAACGGCCGCGACACTGGCAACTGCGTATCTCTCCTACGAGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCTTGCAAGAAAGCTGCACAGATCCAACAGCCTCATTCGTGATCTACGCACCAGTCGACGTAGTAGCAATGAACCTCGTCCTAAATGGTGGCGATCCCGACTATGTAGCACTACTCCCCTCAGGGTTTGCCATTCTTCCTGACGGCGGAGGCGGAGAGGGAGTTTCGGGAGGGTCGTTGCTGACGGTTGCATTTCAAATACTGGTGGATTCAGTGCCGACGGCAAAACTGTCACTAGGGTCAGTTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAAAGGATAAAAGCTTCATTATCATGTGAGAATGCATAA 2274 47.23 MPAGIMTPARNMGSMIGRNGNNNVAGFSSPSGLPFSQPSIMDAHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNHELVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMANFGPQPGLGGGDIYGSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTTLDGSTHMLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPHGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDVVAMNLVLNGGDPDYVALLPSGFAILPDGGGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9888700 9894646 + MELO3C019250.2.1 Cme11g00781 341444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00781 757 CDD START_ArGLABRA2_like 279 503 - -
Cme11g00781 757 SMART START_1 284 504 IPR002913 GO:0008289
Cme11g00781 757 Pfam Homeodomain 93 149 IPR001356 GO:0003677
Cme11g00781 757 SUPERFAMILY Bet v1-like 275 506 - -
Cme11g00781 757 Pfam START domain 285 504 IPR002913 GO:0008289
Cme11g00781 757 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Cme11g00781 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 48 754 IPR042160 -
Cme11g00781 757 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Cme11g00781 757 MobiDBLite consensus disorder prediction 66 101 - -
Cme11g00781 757 SMART HOX_1 91 154 IPR001356 GO:0003677
Cme11g00781 757 CDD homeodomain 93 151 IPR001356 GO:0003677
Cme11g00781 757 MobiDBLite consensus disorder prediction 66 92 - -
Cme11g00781 757 Gene3D - 80 167 - -
Cme11g00781 757 ProSiteProfiles START domain profile. 275 507 IPR002913 GO:0008289
Cme11g00781 757 Coils Coil 144 176 - -
Cme11g00781 757 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 48 754 - -
Cme11g00781 757 SUPERFAMILY Homeodomain-like 80 150 IPR009057 -
Cme11g00781 757 SUPERFAMILY Bet v1-like 523 749 - -
Cme11g00781 757 Gene3D - 334 503 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00781 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101214763 1497.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00416 Cme11g00781 CCT
Cme01g00416 Cme11g00781 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00844 Cme-Chr4:10640836 Cme11g00781 Cme-Chr11:9888700 1.16E-117 dispersed
Cme04g00956 Cme-Chr4:12834928 Cme11g00781 Cme-Chr11:9888700 2.89E-20 dispersed
Cme06g00978 Cme-Chr6:6946483 Cme11g00781 Cme-Chr11:9888700 0 dispersed
Cme10g00945 Cme-Chr10:7183532 Cme11g00781 Cme-Chr11:9888700 8.56E-23 dispersed
Cme11g00781 Cme-Chr11:9888700 Cme11g02549 Cme-Chr11:31886646 0 dispersed
Cme08g00088 Cme-Chr8:595852 Cme11g00781 Cme-Chr11:9888700 2.41E-20 transposed
Cme01g00416 Cme-Chr1:2932684 Cme11g00781 Cme-Chr11:9888700 0 wgd
Cme11g00781 Cme-Chr11:9888700 Cme12g01470 Cme-Chr12:22385995 0 wgd
Cme11g00781 Cme-Chr11:9888700 Cme08g00387 Cme-Chr8:2409975 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g521 Blo02g00112 Blo15g00501 Bda06g00361 Bda13g00620 Bpe12g00225 . . . Cmo11g01907 Cmo19g00954 Cma02g00163 Cma20g00628 Car02g00137 Car20g00526 Sed05g2013 Cpe15g00750 Cpe04g00733 Bhi05g01315 Tan02g0328 Cmetu01g0772 Lac12g0611 Hepe02g0212 . . Cla02g00180 Cam02g0194 Cec02g0192 Cco02g0186 Clacu02g0189 Cmu02g0186 Cre02g0518 Cone3ag1343 Cone10ag1284 Cone8ag1442 Cone12ag1384 . Csa07g00370 . Cme01g00416 . . Bda14g00713 . Bpe14g00705 Bpe07g00606 Bma02g01326 Bma12g00798 Sed01g0475 Cmo02g00167 Cmo20g00616 Cma11g01832 Cma19g00929 Car11g01520 Car19g00719 Cpe16g00448 Cpe05g01445 Bhi10g01447 Tan05g0866 Cmetu11g1134 . Hepe08g0472 . . Cla02g00833 Cam02g0971 Cec02g0890 Cco02g0929 Clacu02g0881 Cmu02g0869 Cre02g1186 Lsi11g01463 . Chy01g00419 Cme11g00781
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g02549 . 58 615 Homeobox Transcription Factor Family AT4G00730 62.2 3.0e-175 612.1
Cme06g00978 . 43 529 Homeobox Transcription Factor Family AT4G00730 55.7 1.9e-137 486.5
Cme04g01900 CCT 1 282 Homeobox Transcription Factor Family AT3G01470 53.8 4.9e-59 224.9
Cme09g00366 CCT 1 276 Homeobox Transcription Factor Family AT3G01470 52.0 7.1e-50 194.5
Cme01g02704 . 52 737 Homeobox Transcription Factor Family AT1G79840 53.0 7.2e-200 694.1
Cme04g01106 . 74 438 Homeobox Transcription Factor Family AT1G79840 60.6 2.4e-110 396.7
Cme10g00433 . 4 299 Homeobox Transcription Factor Family AT1G69780 64.2 2.2e-81 299.3
Cme12g01106 CCT 4 844 Homeobox Transcription Factor Family AT2G34710 79.8 0.0e+00 1335.1
Cme08g00088 CCT 4 845 Homeobox Transcription Factor Family AT2G34710 77.5 0.0e+00 1299.6
Cme01g02905 . 3 818 Homeobox Transcription Factor Family AT2G34710 66.2 5.0e-312 1067.0
Cme04g00182 . 1 829 Homeobox Transcription Factor Family AT2G34710 63.2 7.3e-303 1036.6
Cme11g01800 CCT,ECH 23 584 Homeobox Transcription Factor Family AT2G34710 65.8 1.3e-222 770.0
Cme12g00460 CCT,ECH 8 598 Homeobox Transcription Factor Family AT2G34710 63.6 2.9e-211 732.3
Cme01g02905 . 1 789 Homeobox Transcription Factor Family AT1G52150 85.6 0.0e+00 1353.6
Cme04g00182 . 7 781 Homeobox Transcription Factor Family AT1G52150 76.6 0.0e+00 1197.2
Cme08g00088 CCT 7 821 Homeobox Transcription Factor Family AT1G52150 65.0 3.9e-298 1020.8
Cme12g01106 CCT 14 796 Homeobox Transcription Factor Family AT1G52150 66.5 6.8e-295 1010.0
Cme11g01800 CCT,ECH 23 585 Homeobox Transcription Factor Family AT1G52150 63.8 8.0e-203 704.1
Cme12g00460 CCT,ECH 18 599 Homeobox Transcription Factor Family AT1G52150 62.0 9.5e-196 680.6
Cme06g02551 . 111 370 Homeobox Transcription Factor Family AT4G16780 63.6 1.1e-72 270.4
Cme06g00049 . 6 255 Homeobox Transcription Factor Family AT4G16780 54.4 6.4e-62 234.6
Cme08g00681 . 71 228 Homeobox Transcription Factor Family AT4G16780 67.3 5.6e-50 194.9
Cme01g02508 . 204 327 Homeobox Transcription Factor Family AT4G16780 75.2 6.5e-46 181.4
Cme04g02253 . 228 341 Homeobox Transcription Factor Family AT4G16780 81.7 8.4e-46 181.0
Cme06g01725 . 114 235 Homeobox Transcription Factor Family AT4G16780 72.4 8.7e-43 171.0
Cme02g01633 . 137 256 Homeobox Transcription Factor Family AT4G16780 69.2 8.2e-41 164.5
Cme06g02551 . 81 336 Homeobox Transcription Factor Family AT2G44910 55.4 4.7e-61 231.9
Cme06g00049 . 34 225 Homeobox Transcription Factor Family AT2G44910 65.8 4.4e-59 225.3
Cme08g00681 . 71 235 Homeobox Transcription Factor Family AT2G44910 63.1 1.8e-49 193.4
Cme01g02508 . 157 336 Homeobox Transcription Factor Family AT2G44910 63.2 3.1e-49 192.6
Cme04g02253 . 228 343 Homeobox Transcription Factor Family AT2G44910 80.3 3.2e-46 182.6
Cme02g01633 . 137 262 Homeobox Transcription Factor Family AT2G44910 67.5 2.4e-41 166.4
Cme06g01725 . 119 237 Homeobox Transcription Factor Family AT2G44910 70.0 7.0e-41 164.9
Cme04g01689 . 132 246 Homeobox Transcription Factor Family AT2G44910 67.2 4.2e-38 155.6
Cme04g00182 . 18 829 Homeobox Transcription Factor Family AT4G32880 78.5 0.0e+00 1310.4
Cme01g02905 . 9 818 Homeobox Transcription Factor Family AT4G32880 78.9 0.0e+00 1282.7
Cme12g01106 CCT 14 844 Homeobox Transcription Factor Family AT4G32880 64.9 1.4e-311 1065.4
Cme08g00088 CCT 14 845 Homeobox Transcription Factor Family AT4G32880 64.6 3.2e-303 1037.7
Cme11g01800 CCT,ECH 14 585 Homeobox Transcription Factor Family AT4G32880 62.2 4.7e-206 714.9
Cme12g00460 CCT,ECH 12 599 Homeobox Transcription Factor Family AT4G32880 61.9 3.2e-202 702.2
Cme12g01106 CCT 7 844 Homeobox Transcription Factor Family AT1G30490 77.9 0.0e+00 1280.8
Cme08g00088 CCT 7 845 Homeobox Transcription Factor Family AT1G30490 77.5 0.0e+00 1277.3
Cme01g02905 . 2 818 Homeobox Transcription Factor Family AT1G30490 63.9 1.8e-298 1021.9
Cme04g00182 . 2 829 Homeobox Transcription Factor Family AT1G30490 60.6 1.0e-285 979.5
Cme11g01800 CCT,ECH 5 584 Homeobox Transcription Factor Family AT1G30490 63.1 2.7e-217 752.3
Cme12g00460 CCT,ECH 5 598 Homeobox Transcription Factor Family AT1G30490 63.2 5.5e-210 728.0
Cme11g00781 CCT,ECH 38 757 Homeobox Transcription Factor Family AT4G21750 70.9 1.0e-295 1012.7
Cme01g00416 CCT,ECH 84 760 Homeobox Transcription Factor Family AT4G21750 74.5 8.5e-295 1009.6
Cme08g00387 . 1 716 Homeobox Transcription Factor Family AT4G21750 66.5 3.7e-274 941.0
Cme12g01470 . 7 734 Homeobox Transcription Factor Family AT4G21750 67.1 7.8e-272 933.3
Cme11g02549 . 124 871 Homeobox Transcription Factor Family AT4G21750 54.5 2.3e-215 745.7
Cme08g00510 . 299 549 Homeobox Transcription Factor Family AT5G41410 53.2 2.2e-67 253.8
Cme11g00313 . 248 507 Homeobox Transcription Factor Family AT5G41410 56.7 6.4e-67 252.3
Cme04g02323 . 256 456 Homeobox Transcription Factor Family AT5G41410 55.6 4.0e-61 233.0
Cme05g00241 . 252 461 Homeobox Transcription Factor Family AT5G41410 53.8 2.9e-59 226.9
Cme11g00154 . 277 476 Homeobox Transcription Factor Family AT5G41410 54.9 1.1e-58 224.9
Cme01g02615 . 228 426 Homeobox Transcription Factor Family AT5G41410 52.2 6.4e-51 199.1
Cme12g00421 . 471 672 Homeobox Transcription Factor Family AT5G41410 52.0 1.6e-49 194.5
Cme08g02450 CCT,ECH 115 284 Homeobox Transcription Factor Family AT5G41410 50.3 8.4e-43 172.2
Cme11g00313 . 93 485 Homeobox Transcription Factor Family AT4G36870 53.6 7.7e-104 374.8
Cme08g00510 . 199 530 Homeobox Transcription Factor Family AT4G36870 62.6 1.0e-95 347.8
Cme09g01786 . 151 365 Homeobox Transcription Factor Family AT4G36870 56.8 9.2e-65 245.0
Cme12g00421 . 465 642 Homeobox Transcription Factor Family AT4G36870 55.6 1.5e-46 184.5
Cme04g02323 . 188 428 Homeobox Transcription Factor Family AT1G75410 51.4 5.4e-54 208.8
Cme12g00421 . 465 641 Homeobox Transcription Factor Family AT1G75410 50.8 4.0e-41 166.0
Cme08g00510 . 290 690 Homeobox Transcription Factor Family AT2G23760 56.4 4.1e-107 386.0
Cme11g00313 . 240 672 Homeobox Transcription Factor Family AT2G23760 60.8 9.5e-104 374.8
Cme05g00241 . 183 462 Homeobox Transcription Factor Family AT1G19700 52.1 4.0e-65 246.1
Cme11g00313 . 310 507 Homeobox Transcription Factor Family AT1G19700 58.6 1.6e-58 224.2
Cme09g01786 . 194 393 Homeobox Transcription Factor Family AT1G19700 57.7 4.8e-58 222.6
Cme12g00421 . 471 664 Homeobox Transcription Factor Family AT1G19700 53.6 5.7e-51 199.1
Cme04g02662 CCT,ECH 216 349 Homeobox Transcription Factor Family AT1G19700 50.3 4.2e-38 156.4
Cme08g02450 CCT,ECH 57 286 Homeobox Transcription Factor Family AT5G02030 57.8 2.6e-70 263.5
Cme01g02508 . 197 333 Homeobox Transcription Factor Family AT4G17460 71.8 7.1e-45 177.9
Cme08g00681 . 1 230 Homeobox Transcription Factor Family AT4G17460 51.2 9.3e-45 177.6
Cme04g02253 . 228 341 Homeobox Transcription Factor Family AT4G17460 79.1 5.6e-42 168.3
Cme06g01725 . 100 235 Homeobox Transcription Factor Family AT4G17460 63.3 2.2e-38 156.4
Cme06g02551 . 79 370 Homeobox Transcription Factor Family AT5G47370 52.5 1.2e-63 240.4
Cme06g00049 . 6 222 Homeobox Transcription Factor Family AT5G47370 55.1 1.8e-56 216.5
Cme01g02508 . 119 333 Homeobox Transcription Factor Family AT5G47370 52.2 2.0e-47 186.4
Cme08g00681 . 1 230 Homeobox Transcription Factor Family AT5G47370 52.8 1.4e-45 180.3
Cme04g02253 . 228 340 Homeobox Transcription Factor Family AT5G47370 82.5 6.0e-44 174.9
Cme06g01725 . 111 236 Homeobox Transcription Factor Family AT5G47370 68.5 2.4e-40 162.9
Cme02g01633 . 137 252 Homeobox Transcription Factor Family AT5G47370 69.0 1.2e-36 150.6
Cme08g00681 . 1 264 Homeobox Transcription Factor Family AT4G37790 64.0 1.5e-84 309.7
Cme06g01725 . 1 242 Homeobox Transcription Factor Family AT4G37790 58.4 7.9e-65 244.2
Cme04g02253 . 228 340 Homeobox Transcription Factor Family AT4G37790 83.2 2.1e-49 193.0
Cme01g02508 . 199 349 Homeobox Transcription Factor Family AT4G37790 65.6 4.7e-49 191.8
Cme06g00049 . 107 222 Homeobox Transcription Factor Family AT4G37790 76.7 5.4e-45 178.3
Cme02g01633 . 137 252 Homeobox Transcription Factor Family AT4G37790 73.3 1.2e-41 167.2
Cme04g01689 . 134 246 Homeobox Transcription Factor Family AT4G37790 69.0 4.4e-39 158.7
Cme06g00049 . 1 226 Homeobox Transcription Factor Family AT3G60390 57.0 2.1e-66 249.6
Cme06g02551 . 103 367 Homeobox Transcription Factor Family AT3G60390 56.3 3.1e-65 245.7
Cme01g02508 . 195 336 Homeobox Transcription Factor Family AT3G60390 72.2 2.4e-49 193.0
Cme08g00681 . 71 228 Homeobox Transcription Factor Family AT3G60390 63.4 2.0e-48 189.9
Cme04g02253 . 228 343 Homeobox Transcription Factor Family AT3G60390 81.2 5.0e-47 185.3
Cme06g01725 . 79 235 Homeobox Transcription Factor Family AT3G60390 59.2 1.1e-43 174.1
Cme02g01633 . 137 255 Homeobox Transcription Factor Family AT3G60390 69.7 4.1e-41 165.6
Cme04g01689 . 134 250 Homeobox Transcription Factor Family AT3G60390 65.3 7.2e-38 154.8
Cme08g00681 . 1 264 Homeobox Transcription Factor Family AT2G22800 60.6 5.8e-76 281.2
Cme06g01725 . 1 236 Homeobox Transcription Factor Family AT2G22800 60.3 3.1e-61 232.3
Cme01g02508 . 196 326 Homeobox Transcription Factor Family AT2G22800 71.0 1.1e-47 187.2
Cme04g02253 . 228 340 Homeobox Transcription Factor Family AT2G22800 79.6 1.9e-47 186.4
Cme06g02551 . 86 319 Homeobox Transcription Factor Family AT2G22800 51.3 3.1e-45 179.1
Cme06g00049 . 107 222 Homeobox Transcription Factor Family AT2G22800 73.3 2.9e-43 172.6
Cme02g01633 . 116 252 Homeobox Transcription Factor Family AT2G22800 63.5 2.5e-39 159.5
Cme04g01689 . 134 246 Homeobox Transcription Factor Family AT2G22800 68.1 3.7e-38 155.6
Cme11g02549 . 125 872 Homeobox Transcription Factor Family AT3G61150 67.3 2.1e-275 945.3
Cme06g00978 . 55 781 Homeobox Transcription Factor Family AT3G61150 57.9 1.2e-230 796.6
Cme01g00416 CCT,ECH 62 760 Homeobox Transcription Factor Family AT3G61150 52.0 7.4e-204 707.6
Cme11g00781 CCT,ECH 63 756 Homeobox Transcription Factor Family AT3G61150 50.2 3.1e-194 675.6
Cme08g00429 . 100 353 Homeobox Transcription Factor Family AT4G08150 56.6 2.9e-76 282.7
Cme01g00454 . 99 330 Homeobox Transcription Factor Family AT4G08150 58.5 1.5e-69 260.4
Cme10g00541 . 79 327 Homeobox Transcription Factor Family AT4G08150 52.3 1.0e-65 247.7
Cme03g02134 . 1 153 Homeobox Transcription Factor Family AT4G08150 77.1 6.9e-62 235.0
Cme07g00247 . 98 213 Homeobox Transcription Factor Family AT4G08150 67.5 4.3e-40 162.5
Cme10g00541 . 1 338 Homeobox Transcription Factor Family AT1G70510 58.4 2.7e-101 365.5
Cme03g02134 . 28 126 Homeobox Transcription Factor Family AT1G70510 67.7 5.5e-38 155.2
Cme07g00094 . 159 458 Homeobox Transcription Factor Family AT5G25220 83.0 3.6e-138 488.4
Cme03g01594 . 173 529 Homeobox Transcription Factor Family AT5G25220 65.3 3.4e-120 428.7
Cme09g01708 . 17 300 Homeobox Transcription Factor Family AT5G25220 68.4 2.2e-103 372.9
Cme07g00094 . 171 457 Homeobox Transcription Factor Family AT5G11060 81.7 3.7e-132 468.4
Cme03g01594 . 169 539 Homeobox Transcription Factor Family AT5G11060 62.5 1.6e-116 416.4
Cme09g01708 . 32 299 Homeobox Transcription Factor Family AT5G11060 68.6 2.6e-101 365.9
Cme07g00094 . 80 443 Homeobox Transcription Factor Family AT4G32040 60.7 1.4e-112 403.3
Cme03g01594 . 162 514 Homeobox Transcription Factor Family AT4G32040 57.2 8.8e-99 357.5
Cme09g01708 . 25 285 Homeobox Transcription Factor Family AT4G32040 63.6 1.5e-90 330.1
Cme10g00541 . 1 339 Homeobox Transcription Factor Family AT1G23380 65.5 6.6e-119 424.1
Cme05g01544 . 59 304 Homeobox Transcription Factor Family AT1G23380 52.0 3.8e-66 248.8
Cme08g00429 . 100 340 Homeobox Transcription Factor Family AT1G23380 50.2 3.8e-66 248.8
Cme03g02134 . 28 126 Homeobox Transcription Factor Family AT1G23380 67.7 3.7e-37 152.5
Cme09g01708 . 1 299 Homeobox Transcription Factor Family AT1G62990 79.1 3.7e-129 458.0
Cme07g00094 . 180 457 Homeobox Transcription Factor Family AT1G62990 64.8 2.2e-97 352.4
Cme03g01594 . 173 528 Homeobox Transcription Factor Family AT1G62990 51.0 3.6e-84 308.5
Cme04g00141 . 17 704 Homeobox Transcription Factor Family AT4G17710 53.6 9.1e-182 634.0
Cme10g00433 . 4 299 Homeobox Transcription Factor Family AT1G26960 57.4 1.4e-63 240.0
Cme09g00288 . 1 296 Homeobox Transcription Factor Family AT3G01220 53.3 5.7e-50 194.9
Cme12g02041 . 1 690 Homeobox Transcription Factor Family AT1G17920 60.1 6.2e-220 760.8
Cme12g02041 . 19 690 Homeobox Transcription Factor Family AT1G73360 63.6 1.8e-238 822.4
Cme09g01407 . 33 209 Homeobox Transcription Factor Family AT1G70920 51.9 1.2e-37 153.3
Cme11g00781 CCT,ECH 62 757 Homeobox Transcription Factor Family AT1G05230 82.8 0.0e+00 1103.6
Cme01g00416 CCT,ECH 49 759 Homeobox Transcription Factor Family AT1G05230 77.2 3.0e-313 1070.8
Cme08g00387 . 21 719 Homeobox Transcription Factor Family AT1G05230 63.9 2.5e-248 855.1
Cme12g01470 . 62 734 Homeobox Transcription Factor Family AT1G05230 65.5 1.5e-245 845.9
Cme11g02549 . 142 872 Homeobox Transcription Factor Family AT1G05230 55.6 4.5e-213 738.0
Cme11g00781 CCT,ECH 78 757 Homeobox Transcription Factor Family AT2G32370 56.0 2.1e-205 712.6
Cme01g00416 CCT,ECH 67 758 Homeobox Transcription Factor Family AT2G32370 53.4 4.0e-201 698.4
Cme08g00826 . 50 207 Homeobox Transcription Factor Family AT4G36740 54.8 2.8e-41 165.6
Cme11g02549 . 136 869 Homeobox Transcription Factor Family AT5G52170 51.4 8.7e-198 687.2
Cme06g00978 . 33 782 Homeobox Transcription Factor Family AT5G52170 51.0 1.1e-195 680.2
Cme04g00141 . 20 704 Homeobox Transcription Factor Family AT5G46880 62.1 5.0e-240 827.8
Cme04g02323 . 184 466 Homeobox Transcription Factor Family AT2G16400 56.1 1.2e-76 284.3
Cme05g00241 . 181 462 Homeobox Transcription Factor Family AT2G16400 55.7 9.5e-74 274.6
Cme11g00313 . 241 507 Homeobox Transcription Factor Family AT2G16400 51.3 2.1e-65 246.9
Cme09g01786 . 151 396 Homeobox Transcription Factor Family AT2G16400 51.0 1.9e-61 233.8
Cme08g02450 CCT,ECH 116 276 Homeobox Transcription Factor Family AT2G16400 52.0 4.6e-44 176.0
Cme04g02323 . 160 456 Homeobox Transcription Factor Family AT2G27220 50.3 3.2e-65 246.1
Cme04g02662 CCT,ECH 214 357 Homeobox Transcription Factor Family AT2G27220 52.4 7.5e-38 155.2
Cme05g00241 . 1 468 Homeobox Transcription Factor Family AT2G35940 53.4 4.3e-104 375.9
Cme01g02615 . 155 418 Homeobox Transcription Factor Family AT2G35940 51.1 8.7e-65 245.4
Cme08g00510 . 283 554 Homeobox Transcription Factor Family AT2G35940 51.0 2.5e-64 243.8
Cme09g01786 . 201 391 Homeobox Transcription Factor Family AT2G35940 63.6 5.6e-64 242.7
Cme08g02450 CCT,ECH 115 286 Homeobox Transcription Factor Family AT2G35940 51.8 8.2e-47 185.7
Cme04g02662 CCT,ECH 214 353 Homeobox Transcription Factor Family AT2G35940 54.3 1.6e-42 171.4
Cme09g01786 . 225 392 Homeobox Transcription Factor Family AT4G34610 62.5 4.1e-54 209.5
Cme08g02450 CCT,ECH 133 276 Homeobox Transcription Factor Family AT4G34610 55.4 2.4e-41 167.2
Cme11g00781 CCT,ECH 38 755 Homeobox Transcription Factor Family AT4G04890 73.7 7.0e-302 1033.1
Cme01g00416 CCT,ECH 56 759 Homeobox Transcription Factor Family AT4G04890 74.3 5.0e-300 1026.9
Cme08g00387 . 1 716 Homeobox Transcription Factor Family AT4G04890 68.6 1.9e-278 955.3
Cme12g01470 . 1 734 Homeobox Transcription Factor Family AT4G04890 67.0 1.4e-273 939.1
Cme11g02549 . 136 871 Homeobox Transcription Factor Family AT4G04890 54.8 1.8e-217 752.7
Cme06g00978 . 49 780 Homeobox Transcription Factor Family AT4G04890 51.6 1.6e-197 686.4
Cme12g02041 . 7 690 Homeobox Transcription Factor Family AT4G04890 50.4 1.2e-176 617.1
Cme12g01106 CCT 1 844 Homeobox Transcription Factor Family AT5G60690 67.1 0.0e+00 1114.0
Cme08g00088 CCT 8 844 Homeobox Transcription Factor Family AT5G60690 68.4 0.0e+00 1092.0
Cme01g02905 . 9 816 Homeobox Transcription Factor Family AT5G60690 65.9 3.5e-305 1044.3
Cme04g00182 . 20 829 Homeobox Transcription Factor Family AT5G60690 61.9 1.8e-290 995.3
Cme11g01800 CCT,ECH 1 584 Homeobox Transcription Factor Family AT5G60690 77.6 7.5e-276 946.8
Cme12g00460 CCT,ECH 1 598 Homeobox Transcription Factor Family AT5G60690 77.4 9.2e-266 913.3
Cme08g00429 . 94 356 Homeobox Transcription Factor Family AT1G62360 78.7 2.3e-115 412.5
Cme01g00454 . 95 344 Homeobox Transcription Factor Family AT1G62360 70.6 2.6e-98 355.9
Cme10g00541 . 82 327 Homeobox Transcription Factor Family AT1G62360 51.6 9.5e-61 231.1
Cme05g01544 . 57 306 Homeobox Transcription Factor Family AT1G62360 50.8 1.4e-59 227.3
Cme03g02134 . 15 131 Homeobox Transcription Factor Family AT1G62360 73.5 4.8e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000325 5 8 4 2 5 4 7 4 4 4 4 4 7 4 4 6 4 4 6 4 4 4 4 4 4 5 4 9 4 2 138
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42164 PF01852 START 3.40E-60 CL0209 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00781 Cme_Chr11 FPKM 5.222307 5.282602 6.109295 6.320726 7.321007 7.925486 7.933039 4.152487 3.404635 3.817085