Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00787 ATGGATGACGTCAATGCCGATAATGACATTCTTCAAGGAACAAAGCTAAACTTGATCCTACACGACACGAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGTTGATGCAGGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCGGGCATCGCTCATGTCATTTCCCATGTTATTAATGAACTCCATATTCCACTTCTATCATTTGGAGCTACAGATCCTGCTTTATCTGCACAGGAATACCAATATTTCGTTCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATAGTAGATCATTTTGGATGGAGAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCCGCATTGAGTGATGCCTTGGCGAAGAAGCGAGCCAAAATCTCATATAAGGCTGCTCTTCCTCCTGGATCCCCCAATAGCGCAATAAGTGACTTGTTGGTTTCGATCAACCTGATGGAATCTCGAGTTTACATTGTACACGTCAACCCTGACAGTGGTTTATCAGTATTTTCAATAGCTAAGAAACTTCAGATGTTAGATAGTGGCTATGTTTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGGCAATCTGAAGAAAAACTTTATCTCCAAATGGAGGAATCTAAAATTCAAAAAGAGTCCAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCTCGTGCTCTCGACACATTCATTAAAGAAGGTGGAAATATATCCTTTTCCAATGACCCGAAGTTACGTGAAAATAATGGAAGCATGCTGCACTTAAAATCCCTCCGTGTGTTTAATGGCGGTGAACAACTTCTACAAACAATTAAGAAAACGAACTTCACAGGTGTAAGTGGGCGAATTCAATTTGGTGATGATAGAAATTTGATTAATCCAACTTATGATATCCTCAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAGCTATTGCACCAGAAAAGTTGTATACCAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTATAGTGTCATATGGCCCGGTGAAATAACGACCATTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGATAACAATCCTCTAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCAGCCATAAACTTGTTGTCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTATAGCAATCTTGTATATGAAGTTTCACAAAATAAATATGATGCGGCTGTTGGAGATATTACTATTGTAACAAATAGGACGAAGATTGTAGACTTCACACAACCATTTATGGAATCGGGACTTGTTGTAGTTACTGTCGTCAAAGGGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCATTTACTATTCAAATGTGGGCTGTCACTGCTTTATTCTTTATTTTTGTTGGAGCCGTTGTCTGGATTCTTGAGCATCGGACTAATGAAGAGTTTCGTGGTCCACCGAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACAATGTTCTTTTCTCATAAGGAAAACACAGTAAGCACTCTCGGAAGATTGGTGCTGATAATATGGCTTTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATTTTAACGGTGCAACAACTAACATCGAAGATTGAAGGGATTGATAGCTTAATCTCTAGCAAAGATGCCATTGGAGTTCAGGAAGGGTCATTTGCATTGAATTATTTGACTGATGAACTGAATATAGAAGGATCTAGGATCATTAAACTGAAAAATCAGGATGAGTATGATGATGCTCTTCGGCGTGGACCAGAAAATGGTGGGGTGGCTGCCATTGTTGACGAGCTTCCTTATGTTGAACTTTTTCTGGCTGGTACCAATTGTGTATTCAAGACAGTTGGACAAGAGTTTACGAAAAGCGGATGGGGATTTGCGTTCCAAAGGGACTCTCCTCTCGCAGTTGATTTATCAACAGCGATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCATGACAAATGGCTCTCACGATCTGAGTGTTCCCTGGGTTTGAACCAAGCCGACATAAATCAACTATCACTGAGTAGCTTTTGGGGATTGTTCTTAATTTGTGGCATTTCCTGCTTTATTGCTCTTTTGATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCAGAAACTCAGCCTGAAGTCGAGCAAATTGAACCTGTTAGAACGAGACGCCTTAGTCGTACAACCAGCTTCATGCTTTTTGTAGATAAAAAAGAAGCAGAAGTCAAAGACAAGCTTAAAAAAAAATCAAGTGATAACAAACAAGCTAGCCAGAGTTTAGAGGGCCACTCTAATTCACCTCCATGA 2598 40.22 MDDVNADNDILQGTKLNLILHDTNCSGFLGTVEALQLMQDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQEYQYFVRTTQSDYFQMNAIADIVDHFGWREVVAIFVDDDNGRSGISALSDALAKKRAKISYKAALPPGSPNSAISDLLVSINLMESRVYIVHVNPDSGLSVFSIAKKLQMLDSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWRNLKFKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLRENNGSMLHLKSLRVFNGGEQLLQTIKKTNFTGVSGRIQFGDDRNLINPTYDILNIGGTGSRRIGYWSNYSGLSAIAPEKLYTKPLNASPNNHLYSVIWPGEITTIPRGWVFPHNGKPLQIVVPNRVSYKAFVSKDNNPLGVKGYCIDVFEAAINLLSYPVPHTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKGEKSSPWAFLRPFTIQMWAVTALFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSKDAIGVQEGSFALNYLTDELNIEGSRIIKLKNQDEYDDALRRGPENGGVAAIVDELPYVELFLAGTNCVFKTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRSECSLGLNQADINQLSLSSFWGLFLICGISCFIALLIFFFRVLFQYRRFTPETQPEVEQIEPVRTRRLSRTTSFMLFVDKKEAEVKDKLKKKSSDNKQASQSLEGHSNSPP 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10028159 10032502 - MELO3C019256.2.1 Cme11g00787 341450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00787 865 Gene3D - 1 340 - -
Cme11g00787 865 CDD PBP1_GABAb_receptor_plant 1 367 IPR044440 -
Cme11g00787 865 Gene3D - 521 648 - -
Cme11g00787 865 Gene3D - 92 365 - -
Cme11g00787 865 SMART GluR_14 412 754 IPR001320 GO:0015276|GO:0016020
Cme11g00787 865 PANTHER GLUTAMATE RECEPTOR 3.4 1 846 - -
Cme11g00787 865 CDD GluR_Plant 409 752 - -
Cme11g00787 865 Gene3D - 405 520 - -
Cme11g00787 865 SUPERFAMILY Periplasmic binding protein-like II 387 753 - -
Cme11g00787 865 Gene3D - 649 756 - -
Cme11g00787 865 Pfam Ligand-gated ion channel 754 784 IPR001320 GO:0015276|GO:0016020
Cme11g00787 865 Pfam Bacterial extracellular solute-binding proteins, family 3 422 753 IPR001638 -
Cme11g00787 865 MobiDBLite consensus disorder prediction 840 865 - -
Cme11g00787 865 SUPERFAMILY Periplasmic binding protein-like I 1 403 IPR028082 -
Cme11g00787 865 Pfam Receptor family ligand binding region 1 349 IPR001828 -
Cme11g00787 865 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 846 - -
Cme11g00787 865 PIRSF IGluLR_plant 1 864 IPR017103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00787 Cme-Chr11:10028159 Cme11g00792 Cme-Chr11:10157240 0 dispersed
Cme11g00787 Cme-Chr11:10028159 Cme11g00789 Cme-Chr11:10085949 0 proximal
Cme01g01140 Cme-Chr1:14678459 Cme11g00787 Cme-Chr11:10028159 0 transposed
Cme03g01369 Cme-Chr3:23174475 Cme11g00787 Cme-Chr11:10028159 2.06E-154 transposed
Cme04g01184 Cme-Chr4:16178560 Cme11g00787 Cme-Chr11:10028159 4.22E-144 transposed
Cme07g00040 Cme-Chr7:249588 Cme11g00787 Cme-Chr11:10028159 0 transposed
Cme08g00998 Cme-Chr8:6507879 Cme11g00787 Cme-Chr11:10028159 0 transposed
Cme01g00419 Cme-Chr1:2956145 Cme11g00787 Cme-Chr11:10028159 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00787 K05387 - csv:101215485 1638.62