Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00789 ATGATTTCTAGATTGGACTATGGGGTTTTACAGTACATTGGAAATGGGCCTGCGATTTTAGCTGCTGTGGACGACGTCAATGCCGATAACCACATTCTTCCCGGAACGAAGCTGAACTTGATCCTACATGACACAAACTGCAGCGGATTTTTTGGAACTATGGAAGGTGCATTGTCTAATTTCCACTTTGATTCTCTTTCTATTACTCTGGAGGTAACAATTGATTCCGTGAGCATGTATCTAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGCTATTGGACCACAATCTTCAGGCATCGCTCACGTCATTTCCCATGTTATTAATGAACTCCATATTCCACTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTGCTCAACAATACCAATATTTCGTTCGAACCACACAGAGTGATTACTTTCAGATGAATGCAATTGCTGATATGGTTGACAAGTTTGGATGGAAAGAGGTGGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGCGGGATATCGGCATTGAGCGATGCCTTGGCAAAGAAGCGAGCCAAGATCTCTTATAAGGCTGCCTTCCCTTCTGGATCCTCCATTAGCACAATAAGTGACTTGTTGGTTTCCGTGAACATGATGGAATCTCGGGTTTACGTTGTTCACGTCAATCCCGACACAGGTTTATCAGTATTTTCAATAGCTAAGAAACTTCAAATGATGGGTAGTGGCTATGTTTGGATCGCAACAGATTGGCTTCCTTCTTTTCTTGATTCGTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTGCAAGGTGTTGTTGCTTTTCGCCACCACACCCCCGATGGCAATCTGAAGAAAAATTTTATCTCCAAGTGGAGGAATCTAAAATACAAAAAGAGCCCAAACTTCAACTCTTATGCACTCCATGCATATGACTCTGTTTGGTTAGTAGCCCGTGCTCTCGACACGTTTTTAAAAGAAGGTGGAAATATATCATTTTCCAACGACCCAAAGTTGCGTGAAAACAATGGGAGCATGTTTCAATTAAAATCATTCAAAGTGTTTAACGGTGGCGAACAACTTCTACAGACAATTAAGAGAACCAACTTCACAGGGGTAAGTGGTCAAATTCAATTTGGTGATGATGGTAAACATTTGATTCATCCAGCTTATGATATCTTGAACATTGGAGGAACTGGTATACGTAGAATTGGGTACTGGTCAAATTATTCTGGTCTATCAACTATAGCACCAGAAAACTTGTATGCCAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTACAGTGTCATATGGCCGGGTGAAACATCGACCACTCCTCGAGGATGGGTATTTCCACACAGTGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAGCAATCTAGTGTATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTAGACTTCACTCAACCGTTTATGGAGTCGGGACTTGTTGTAGTTACTGTTGTGAAAGAGGAGAAGTCAAGTCCATGGGCCTTTCTCAGGCCGTTTACCATTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCATCGGACCAATGAAGAGTTTCGTGGTCCACCAAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTCGGACGGTTGGTGCTGATAATATGGCTCTTTGTCGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTGCAACAACTAACGTCAAATATTAAAGGGATTGATAGCTTAATCTCTAGCACCGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAAGTACTTGATTGATGACCTAGGTATAGCAGCATCTAGAATCATTAAGCTAAAAGATCAGGAGGAATATGCCGATGCTCTTCGGCATGGAGCGGAAGATGGTGGTGTCGCTGCCATTGTTGATGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGAACCAATTGCATGTACAGGATAGTTGGAGAGGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTCGCAGTCGATTTATCCACAGTCATTCTTCAACTCTCAGAGAATGGTGATCTCCAAAAGATCCATGATAAATGGCTATCACGAACCGAATGTTCGACGAACCTGAACCAAGTGGATGTAAACCAGCTATCACTGAGTAGCTTTTGGGGATTGTTTCTAATTTGTGGGATAGCCTGTTTTGTTGCTCTATCGGTATTCTTCTTTCGATTACTATCACAATACCGAAGATTTAGTCCAGAAACCCAGTCAGAAGTAGAGGAGATGGAACCTGTAAGGACGAGACGTCTTAGTCGTACAACTAGCTTCATGAACTTTGTAGATAAAAAAGAAGCAGAAGTTAAACCAAAACTTAAAAGAAGCAGTGATAACAAACAAGTTAGCCAGAGCTCAGGGAGCCTTCCTGCTTCACCTCCTTGA 2742 41.58 MISRLDYGVLQYIGNGPAILAAVDDVNADNHILPGTKLNLILHDTNCSGFFGTMEGALSNFHFDSLSITLEVTIDSVSMYLALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVDKFGWKEVVAIFVDDDNGRSGISALSDALAKKRAKISYKAAFPSGSSISTISDLLVSVNMMESRVYVVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVAFRHHTPDGNLKKNFISKWRNLKYKKSPNFNSYALHAYDSVWLVARALDTFLKEGGNISFSNDPKLRENNGSMFQLKSFKVFNGGEQLLQTIKRTNFTGVSGQIQFGDDGKHLIHPAYDILNIGGTGIRRIGYWSNYSGLSTIAPENLYAKPLNASPNNHLYSVIWPGETSTTPRGWVFPHSGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSNLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTIQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSNIKGIDSLISSTDAIGVQEGSFALKYLIDDLGIAASRIIKLKDQEEYADALRHGAEDGGVAAIVDELPYVELFLAGTNCMYRIVGEEFTKSGWGFAFQRDSPLAVDLSTVILQLSENGDLQKIHDKWLSRTECSTNLNQVDVNQLSLSSFWGLFLICGIACFVALSVFFFRLLSQYRRFSPETQSEVEEMEPVRTRRLSRTTSFMNFVDKKEAEVKPKLKRSSDNKQVSQSSGSLPASPP 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10085949 10090771 - MELO3C019258.2.1 Cme11g00789 341452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00789 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 895 - -
Cme11g00789 913 MobiDBLite consensus disorder prediction 886 913 - -
Cme11g00789 913 Gene3D - 140 414 - -
Cme11g00789 913 Gene3D - 697 805 - -
Cme11g00789 913 Gene3D - 18 389 - -
Cme11g00789 913 Gene3D - 455 569 - -
Cme11g00789 913 SMART GluR_14 461 803 IPR001320 GO:0015276|GO:0016020
Cme11g00789 913 Pfam Ligand-gated ion channel 803 834 IPR001320 GO:0015276|GO:0016020
Cme11g00789 913 CDD PBP1_GABAb_receptor_plant 18 415 IPR044440 -
Cme11g00789 913 PIRSF IGluLR_plant 14 62 IPR017103 -
Cme11g00789 913 PIRSF IGluLR_plant 65 911 IPR017103 -
Cme11g00789 913 SUPERFAMILY Periplasmic binding protein-like I 16 452 IPR028082 -
Cme11g00789 913 CDD GluR_Plant 458 801 - -
Cme11g00789 913 Pfam Receptor family ligand binding region 17 398 IPR001828 -
Cme11g00789 913 SUPERFAMILY Periplasmic binding protein-like II 436 802 - -
Cme11g00789 913 PRINTS Metabotropic glutamate GPCR signature 93 119 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cme11g00789 913 PRINTS Metabotropic glutamate GPCR signature 27 46 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cme11g00789 913 PRINTS Metabotropic glutamate GPCR signature 12 27 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cme11g00789 913 PRINTS Metabotropic glutamate GPCR signature 160 177 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cme11g00789 913 PRINTS Metabotropic glutamate GPCR signature 125 144 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cme11g00789 913 PRINTS Metabotropic glutamate GPCR signature 144 160 IPR000337 GO:0004930|GO:0007186|GO:0016021
Cme11g00789 913 PANTHER GLUTAMATE RECEPTOR 3.4 16 895 - -
Cme11g00789 913 MobiDBLite consensus disorder prediction 897 913 - -
Cme11g00789 913 Gene3D - 570 696 - -
Cme11g00789 913 Pfam Bacterial extracellular solute-binding proteins, family 3 470 802 IPR001638 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00419 Cme11g00789 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00998 Cme-Chr8:6507879 Cme11g00789 Cme-Chr11:10085949 0 dispersed
Cme11g00787 Cme-Chr11:10028159 Cme11g00789 Cme-Chr11:10085949 0 proximal
Cme11g00789 Cme-Chr11:10085949 Cme11g00792 Cme-Chr11:10157240 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00789 K05387 - csv:101207545 1642.09