Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00792 ATGCTTACCCACTTCGAAACAATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGTTATAAGCATCGATCAACAATGATTGATGGGATCATCGGCGCAACCATCACCACTTTGTTAAACAGCTTTAGGGCGTCAAATCGGATGCGTGCATTAATTGGGAACAGTGTCCTGTTTTCGCTTAAAATCGTCTCCGATTCGCTATGGGCATTTCTTGCCGGTTCTGCATGTTGCCAAAGGCCTGCAGTTGTGAATATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGCGGCAAAAGTGGCAATGGAAGCTGCAGTCTCGGATGTGAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCGTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTTGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTCCAAGTCCCTCTTATATCATATGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCATTTTTCCTACGGACAACTCAGAGTGATGCCTATCAAATGACTGCTATGGCAGACTTAATTGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTGGATGATGATTATGGTCGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAGAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTTTAATCTCAGTGAAATCACAGCCATACTCAATAAATCCAAGTTGCTTGGTCCTCGTGTTTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATTTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCTGTTCGGCTTGTGCAACAAACCTCTATAAACATCCTTCAAGGCGTGGTTGTACTTCGTCAACATATTCCTGAGTCCAGCCAAAAAACAACATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGACTCAAGAAACTCTTCGTTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTGCAATTGATAAGTTTCTGAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCACATTGAATTTAACTCAGATCGGAACATTGTCACTAGAGGCTATGAGGTGATCAATATTGATCAGACGGGATTGCGTAGTGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCCCCAGAAACTCTGAAACAGAAACAAATTAGTTATTCACACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAAACCGCGTGGATGGGTGCTTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACATAGAGTAAGTTTTGTTGAATTTGTTACTGCAGTCAATGGAAGCCACAAAAACATTGAAGGATACTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTAATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGACGACCTTGTGAAGAACGTTGCAAATGGTATATTCGATGCTGCTGTTGGAGATATTGCAATTGTGACCAATCGCACACGGATTGTAGACTTTTCACAGCCTTTTGCTTCTACGGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAGCCATTTACAGTAGAGATGTGGTGCGTAACATCGGCATCCTTTTTTATGATTGGGGCGGTCATATGGCTTCTTGAGCACCGAGTAAATGACGATTTCCGTGGTCCACCAAAGAGGCAGCTAATGACAGTAATACTGAGTAGGGGTTCAAACCACATTTCTGACTTCACAACTCAAATTACAGAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACATCAAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCGTTTGCATATAGCTATCTGACCGAGAGTCTATACGTTCCACGATCGAGGCTTGTATCTCTAGGCTCTCCAGAAGAGTATGAAGCAGCACTGCTGAAGGGGCCATTCAGAAAAGGAGGGGTGGCTGCTATTGTAGATGAACTTCCATATATGGAATTATTCTTATCGGGAAGGAATGATTTCGGAATGATCGGACAGCCATTCACCAAGAGCGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCAGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAGAATGGAAAGCTTCAGAAGATCCATGAGAAGTGGTTTTGCAGAATGGGTTGTCCTGCAGAGAGGAGAAGGAAATCTGAGCCTATACAACTTCATTTGGTTAGCTTCTGGGGTCTTTATCTGTTGTGCGGTGCCTTTTCACTCGTTGCTCTTTTTATCTTTTTGCTGCGTATAGTTCGACAATTTGCTCGCTACATACGACAACAGAAGGAATCATCTCAAGCAGAATTGGTGTCATCAAATTCAAACTCAAGTTGGACTCAGGTTATATATAAGTTTATCGACTTTGTTGATGAGAAGGAAGAAGCTATCAAGAGACTTTTTCGAAAGCATGATACTCAGAATCAGGCTAACCGATAG 2958 41.45 MLTHFETMQMILPLSLRDSWFGGHCRRTARSYKHRSTMIDGIIGATITTLLNSFRASNRMRALIGNSVLFSLKIVSDSLWAFLAGSACCQRPAVVNIGAVFTFDSIIGRAAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLVGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHFNLSEITAILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVRLVQQTSINILQGVVVLRQHIPESSQKTTLWSRLRKMLPEDSRNSSLNVYALSAYDTIQVVARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGHIEFNSDRNIVTRGYEVINIDQTGLRSVGYWSNVTGFTIQSPETLKQKQISYSHLNQTLGNVTWPGGKTEKPRGWVLADNERPLIIGVPHRVSFVEFVTAVNGSHKNIEGYCIDLFNEARKLVPYDVPYRLIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLMTVILSRGSNHISDFTTQITEEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYVPRSRLVSLGSPEEYEAALLKGPFRKGGVAAIVDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCRMGCPAERRRKSEPIQLHLVSFWGLYLLCGAFSLVALFIFLLRIVRQFARYIRQQKESSQAELVSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKHDTQNQANR 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10157240 10164256 - MELO3C019260.2.1 Cme11g00792 341455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00792 985 Gene3D - 828 886 - -
Cme11g00792 985 CDD PBP1_GABAb_receptor_plant 96 486 IPR044440 -
Cme11g00792 985 CDD GluR_Plant 530 879 - -
Cme11g00792 985 PIRSF IGluLR_plant 66 985 IPR017103 -
Cme11g00792 985 SUPERFAMILY Periplasmic binding protein-like I 88 523 IPR028082 -
Cme11g00792 985 PANTHER GLUTAMATE RECEPTOR 3.7 79 982 - -
Cme11g00792 985 SMART GluR_14 533 881 IPR001320 GO:0015276|GO:0016020
Cme11g00792 985 Pfam Bacterial extracellular solute-binding proteins, family 3 553 879 IPR001638 -
Cme11g00792 985 Pfam Ligand-gated ion channel 880 910 IPR001320 GO:0015276|GO:0016020
Cme11g00792 985 Gene3D - 537 643 - -
Cme11g00792 985 Gene3D - 644 782 - -
Cme11g00792 985 Pfam Receptor family ligand binding region 112 469 IPR001828 -
Cme11g00792 985 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 79 982 - -
Cme11g00792 985 SUPERFAMILY Periplasmic binding protein-like II 508 879 - -
Cme11g00792 985 Gene3D - 210 484 - -
Cme11g00792 985 Gene3D - 113 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00419 Cme-Chr1:2956145 Cme11g00792 Cme-Chr11:10157240 0 dispersed
Cme11g00787 Cme-Chr11:10028159 Cme11g00792 Cme-Chr11:10157240 0 dispersed
Cme11g00792 Cme-Chr11:10157240 Cme03g01369 Cme-Chr3:23174475 9.44E-140 dispersed
Cme11g00789 Cme-Chr11:10085949 Cme11g00792 Cme-Chr11:10157240 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00792 K05387 - csv:101215715 1721.83