Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00827 | ATGGACTGGACTAGAGGCCACGTCATTGGCCACGGCTCCTCCGCCACCGTTTTTCTCGCTACCGATTCTCCCTCCGGCGATGTCTTCGCCGTCAAAACTGCCCAGCTTTCGCAGTCGCAGTCTCTTCGCAAGGAGCAACACTTTCTTTCTTCTTTAGCCTCTCCTTACATAGTTTCTTATAGAGGCTTTGAAGTCCGTAGAGAACAGAGTGGGGTCATGATGTTCAATCTTTTCATGGAGTACTTACCCAACGGCTCACTCGCCGACACAATTCGCCGCCGTGGAGGACAACGGCTCGACGAGGCAACGATTGCAATCTACACAAGGCAGTTACTAATGGGTCTACAATACATTCATTCCAAAGGCGTAGTACATTGCGACATTAAAGCCCGAAACATTTTGATTGGTCTAGACGGCGAGGCTAAATTGGCTGATTTCGGTTGCGCCAAGTGGGCAACAAGCCAAACGGATCCAATCGGCGGCACGCCCTTGTTCATGGCGCCGGAAGTAGCTCGTGGTGAACACCAAGGTTTCCCCTCCGACATTTGGTCAATTGGGTGTACAATTATCGAAATGGGCACCGGTGGCGGCTCGCCTTGGCCAAAAACAACCGACGACACCGACCCGATTTCTGCTCTGTATCGGATTGGGTATTCCGGGGAGTCGCCGGAAATTCCATGTTATTTATCTGAAGAAGCAAAGGATTTCTTGGAGAAGTGTTTGAAAAGGAATCCAAGTGAGAGATGGACGGCCAATGAGTTAATGAATCATCCATTTTTAAAGGAATTGAATTGTAGAAGGCCATGTAAAACGGAGGAAGTTCATTCAGAATCGCCGACGAGTATTCTAGAACAGGGGATATGGAGATCGATTGAAGAAAGTGAAATTAGGGGAAGGGAATTGGTAAGATCCGATGGTTGGGAGGCAGCGGAAGCAGAGGAGCAGATCCGACGGCTGTGGATGATTTCAGGGGAGCCCAGATGGGAAGAGGATGAGAATTGGATTACAATTAGAAGGAAAGAAGAAGGAGAGAAGAATGGTGGGGCAGATGAGCCAGAAGTGAAAAAATGTAGTAATTATTCTAAAAATAATAATAATAATAGTAATTGGGGTGAGAAAAAGAGAGGTAGTGGAGGGGAAGAGTGGTTGGAAATGGAATTAGGGAATATTAGTTGTGGAATTAGTAGGAATGATTTGGGAGACTATAGTTGTAGGAATATTATTAGTCTTGTAAATAATAATAATCCTTTATCTTTTCATACACTTACACCTATATTTCTTCCTTTAATGCCAACTATATTATGA | 1305 | 45.36 | MDWTRGHVIGHGSSATVFLATDSPSGDVFAVKTAQLSQSQSLRKEQHFLSSLASPYIVSYRGFEVRREQSGVMMFNLFMEYLPNGSLADTIRRRGGQRLDEATIAIYTRQLLMGLQYIHSKGVVHCDIKARNILIGLDGEAKLADFGCAKWATSQTDPIGGTPLFMAPEVARGEHQGFPSDIWSIGCTIIEMGTGGGSPWPKTTDDTDPISALYRIGYSGESPEIPCYLSEEAKDFLEKCLKRNPSERWTANELMNHPFLKELNCRRPCKTEEVHSESPTSILEQGIWRSIEESEIRGRELVRSDGWEAAEAEEQIRRLWMISGEPRWEEDENWITIRRKEEGEKNGGADEPEVKKCSNYSKNNNNNSNWGEKKRGSGGEEWLEMELGNISCGISRNDLGDYSCRNIISLVNNNNPLSFHTLTPIFLPLMPTIL | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10812050 | 10813423 | - | MELO3C019290.2.1 | Cme11g00827 | 341490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00827 | 434 | Pfam | Protein kinase domain | 5 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00827 | 434 | Gene3D | Transferase(Phosphotransferase) domain 1 | 77 | 285 | - | - | |
Cme11g00827 | 434 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 359 | - | - | |
Cme11g00827 | 434 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524 | |
Cme11g00827 | 434 | SMART | serkin_6 | 3 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00827 | 434 | MobiDBLite | consensus disorder prediction | 358 | 373 | - | - | |
Cme11g00827 | 434 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 123 | 135 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g00827 | 434 | ProSiteProfiles | Protein kinase domain profile. | 3 | 260 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00827 | 434 | PRINTS | Tyrosine kinase catalytic domain signature | 79 | 92 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g00827 | 434 | PRINTS | Tyrosine kinase catalytic domain signature | 117 | 135 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g00827 | 434 | PRINTS | Tyrosine kinase catalytic domain signature | 180 | 202 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g00827 | 434 | MobiDBLite | consensus disorder prediction | 339 | 377 | - | - | |
Cme11g00827 | 434 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 269 | IPR011009 | - | |
Cme11g00827 | 434 | MobiDBLite | consensus disorder prediction | 339 | 357 | - | - | |
Cme11g00827 | 434 | CDD | STKc_MAPKKK | 2 | 260 | - | - | |
Cme11g00827 | 434 | PANTHER | MAP KINASE KINASE KINASE | 1 | 359 | - | - | |
Cme11g00827 | 434 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 76 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g00435 | Cme11g00827 | CCT | |
Cme01g00435 | Cme11g00827 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01016 | Cme-Chr1:12531247 | Cme11g00827 | Cme-Chr11:10812050 | 6.81E-99 | dispersed | |
Cme08g00577 | Cme-Chr8:3655913 | Cme11g00827 | Cme-Chr11:10812050 | 2.16E-71 | dispersed | |
Cme09g01564 | Cme-Chr9:20609817 | Cme11g00827 | Cme-Chr11:10812050 | 9.68E-51 | dispersed | |
Cme11g00336 | Cme-Chr11:3494281 | Cme11g00827 | Cme-Chr11:10812050 | 3.36E-60 | dispersed | |
Cme11g00827 | Cme-Chr11:10812050 | Cme05g00263 | Cme-Chr5:1916073 | 2.35E-54 | dispersed | |
Cme12g00064 | Cme-Chr12:620766 | Cme11g00827 | Cme-Chr11:10812050 | 2.51E-64 | transposed | |
Cme01g00435 | Cme-Chr1:3147153 | Cme11g00827 | Cme-Chr11:10812050 | 3.74E-127 | wgd | |
Cme11g00827 | Cme-Chr11:10812050 | Cme08g00419 | Cme-Chr8:2548921 | 7.58E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65238 | PF00069 | Pkinase | 6.30E-57 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00827 | K20716 | - | csv:101208274 | 798.505 |