Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00827 ATGGACTGGACTAGAGGCCACGTCATTGGCCACGGCTCCTCCGCCACCGTTTTTCTCGCTACCGATTCTCCCTCCGGCGATGTCTTCGCCGTCAAAACTGCCCAGCTTTCGCAGTCGCAGTCTCTTCGCAAGGAGCAACACTTTCTTTCTTCTTTAGCCTCTCCTTACATAGTTTCTTATAGAGGCTTTGAAGTCCGTAGAGAACAGAGTGGGGTCATGATGTTCAATCTTTTCATGGAGTACTTACCCAACGGCTCACTCGCCGACACAATTCGCCGCCGTGGAGGACAACGGCTCGACGAGGCAACGATTGCAATCTACACAAGGCAGTTACTAATGGGTCTACAATACATTCATTCCAAAGGCGTAGTACATTGCGACATTAAAGCCCGAAACATTTTGATTGGTCTAGACGGCGAGGCTAAATTGGCTGATTTCGGTTGCGCCAAGTGGGCAACAAGCCAAACGGATCCAATCGGCGGCACGCCCTTGTTCATGGCGCCGGAAGTAGCTCGTGGTGAACACCAAGGTTTCCCCTCCGACATTTGGTCAATTGGGTGTACAATTATCGAAATGGGCACCGGTGGCGGCTCGCCTTGGCCAAAAACAACCGACGACACCGACCCGATTTCTGCTCTGTATCGGATTGGGTATTCCGGGGAGTCGCCGGAAATTCCATGTTATTTATCTGAAGAAGCAAAGGATTTCTTGGAGAAGTGTTTGAAAAGGAATCCAAGTGAGAGATGGACGGCCAATGAGTTAATGAATCATCCATTTTTAAAGGAATTGAATTGTAGAAGGCCATGTAAAACGGAGGAAGTTCATTCAGAATCGCCGACGAGTATTCTAGAACAGGGGATATGGAGATCGATTGAAGAAAGTGAAATTAGGGGAAGGGAATTGGTAAGATCCGATGGTTGGGAGGCAGCGGAAGCAGAGGAGCAGATCCGACGGCTGTGGATGATTTCAGGGGAGCCCAGATGGGAAGAGGATGAGAATTGGATTACAATTAGAAGGAAAGAAGAAGGAGAGAAGAATGGTGGGGCAGATGAGCCAGAAGTGAAAAAATGTAGTAATTATTCTAAAAATAATAATAATAATAGTAATTGGGGTGAGAAAAAGAGAGGTAGTGGAGGGGAAGAGTGGTTGGAAATGGAATTAGGGAATATTAGTTGTGGAATTAGTAGGAATGATTTGGGAGACTATAGTTGTAGGAATATTATTAGTCTTGTAAATAATAATAATCCTTTATCTTTTCATACACTTACACCTATATTTCTTCCTTTAATGCCAACTATATTATGA 1305 45.36 MDWTRGHVIGHGSSATVFLATDSPSGDVFAVKTAQLSQSQSLRKEQHFLSSLASPYIVSYRGFEVRREQSGVMMFNLFMEYLPNGSLADTIRRRGGQRLDEATIAIYTRQLLMGLQYIHSKGVVHCDIKARNILIGLDGEAKLADFGCAKWATSQTDPIGGTPLFMAPEVARGEHQGFPSDIWSIGCTIIEMGTGGGSPWPKTTDDTDPISALYRIGYSGESPEIPCYLSEEAKDFLEKCLKRNPSERWTANELMNHPFLKELNCRRPCKTEEVHSESPTSILEQGIWRSIEESEIRGRELVRSDGWEAAEAEEQIRRLWMISGEPRWEEDENWITIRRKEEGEKNGGADEPEVKKCSNYSKNNNNNSNWGEKKRGSGGEEWLEMELGNISCGISRNDLGDYSCRNIISLVNNNNPLSFHTLTPIFLPLMPTIL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10812050 10813423 - MELO3C019290.2.1 Cme11g00827 341490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00827 434 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00827 434 Gene3D Transferase(Phosphotransferase) domain 1 77 285 - -
Cme11g00827 434 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 359 - -
Cme11g00827 434 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cme11g00827 434 SMART serkin_6 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00827 434 MobiDBLite consensus disorder prediction 358 373 - -
Cme11g00827 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cme11g00827 434 ProSiteProfiles Protein kinase domain profile. 3 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00827 434 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Cme11g00827 434 PRINTS Tyrosine kinase catalytic domain signature 117 135 IPR001245 GO:0004672|GO:0006468
Cme11g00827 434 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Cme11g00827 434 MobiDBLite consensus disorder prediction 339 377 - -
Cme11g00827 434 SUPERFAMILY Protein kinase-like (PK-like) 2 269 IPR011009 -
Cme11g00827 434 MobiDBLite consensus disorder prediction 339 357 - -
Cme11g00827 434 CDD STKc_MAPKKK 2 260 - -
Cme11g00827 434 PANTHER MAP KINASE KINASE KINASE 1 359 - -
Cme11g00827 434 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00435 Cme11g00827 CCT
Cme01g00435 Cme11g00827 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01016 Cme-Chr1:12531247 Cme11g00827 Cme-Chr11:10812050 6.81E-99 dispersed
Cme08g00577 Cme-Chr8:3655913 Cme11g00827 Cme-Chr11:10812050 2.16E-71 dispersed
Cme09g01564 Cme-Chr9:20609817 Cme11g00827 Cme-Chr11:10812050 9.68E-51 dispersed
Cme11g00336 Cme-Chr11:3494281 Cme11g00827 Cme-Chr11:10812050 3.36E-60 dispersed
Cme11g00827 Cme-Chr11:10812050 Cme05g00263 Cme-Chr5:1916073 2.35E-54 dispersed
Cme12g00064 Cme-Chr12:620766 Cme11g00827 Cme-Chr11:10812050 2.51E-64 transposed
Cme01g00435 Cme-Chr1:3147153 Cme11g00827 Cme-Chr11:10812050 3.74E-127 wgd
Cme11g00827 Cme-Chr11:10812050 Cme08g00419 Cme-Chr8:2548921 7.58E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65238 PF00069 Pkinase 6.30E-57 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00827 K20716 - csv:101208274 798.505