Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00875 | ATGATTGAGAAAATGGCCGACCACGAACTCTCCGACTGCTTTCTCCAAATCCCCCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAGCGAAACCTTCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTATCGCCAAAGACGTTGTTGGCAACGAACAGATTCGTTTGCGAAATATGCGGAAAAGGGTTTCAGAGAGACCAGAACTTGCAGCTACACCGGCGAGGGCATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAAGCAAAGAAAAGAGTGTATGTATGTCCTGAGAAAAGCTGTGTGCATCATCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAGAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCGAAGAGATATGCTGTACAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACACTATTTTCAAGGAGAGATAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATTTGAACAATAATTTAATGGGAGGATGGAGAGATCATGAAGAAACAGCAGGGGTATTCATGACTCAACATTTCGGTTCAACAATGAAGCCGGTTACAATGAAAATGAGCAGTAATAGTTTTCAAATGATTGGAGGAATGATGATGAATAATTCAGGAGGGGGAGTGTACGGTGAAGATTCAGTTTGGGGAAATCAAGTACAAATGGGAAATTATTATTATAATGAAAATCAAGGGTTAATGGTGAATGGAGGAGGAGTGGGGGTTTGTTCACTATACAGCCATGAATTTCAGCAAGTAAATGAAACCCAGAGGGGAAATATGTCAGCAACAGCTTTGTTACAAAAAGCTGCTGAAATTGGGGCAACTTCATCTTCTCCTTCTAACACTGTTACAAGATCTGCAGCCCCATCATTATCACTACTACAAATACAACAACAAGGGTTTTTGTTTAACAATGGGAGTGAGTTTTGTAATACAAACAATAATCCAATTGTTGTAGTTGAGAATAATGGGAGTGAGATGTACACTGCAAAACGGCGTCGTAGTCAGAGTGAATTTGAGTGTGGAAGTGGAAATGCAAGAACAGGAACAGGAACAGGAACAGGGGAGACAAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACTCCTCAACATCAATCAACGGATGGATTTAG | 1278 | 41.08 | MIEKMADHELSDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLLATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNLNNNLMGGWRDHEETAGVFMTQHFGSTMKPVTMKMSSNSFQMIGGMMMNNSGGGVYGEDSVWGNQVQMGNYYYNENQGLMVNGGGVGVCSLYSHEFQQVNETQRGNMSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCNTNNNPIVVVENNGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTICHSSTSINGWI | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11738322 | 11740137 | + | MELO3C019330.2.1 | Cme11g00875 | 341538 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00875 | 425 | MobiDBLite | consensus disorder prediction | 380 | 401 | - | - | |
Cme11g00875 | 425 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Cme11g00875 | 425 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cme11g00875 | 425 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 24 | 418 | - | - | |
Cme11g00875 | 425 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 153 | IPR036236 | - | |
Cme11g00875 | 425 | MobiDBLite | consensus disorder prediction | 385 | 401 | - | - | |
Cme11g00875 | 425 | Gene3D | Classic Zinc Finger | 90 | 181 | - | - | |
Cme11g00875 | 425 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cme11g00875 | 425 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 24 | 418 | - | - | |
Cme11g00875 | 425 | SMART | c2h2final6 | 133 | 153 | IPR013087 | - | |
Cme11g00875 | 425 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cme11g00875 | 425 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g00481 | Cme11g00875 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02060 | Cme-Chr1:29401304 | Cme11g00875 | Cme-Chr11:11738322 | 2.37E-98 | dispersed | |
Cme01g02061 | Cme-Chr1:29403562 | Cme11g00875 | Cme-Chr11:11738322 | 5.03E-07 | dispersed | |
Cme02g00092 | Cme-Chr2:707240 | Cme11g00875 | Cme-Chr11:11738322 | 1.64E-107 | dispersed | |
Cme07g00220 | Cme-Chr7:1456692 | Cme11g00875 | Cme-Chr11:11738322 | 5.19E-104 | dispersed | |
Cme07g01703 | Cme-Chr7:22570601 | Cme11g00875 | Cme-Chr11:11738322 | 4.85E-112 | dispersed | |
Cme08g00831 | Cme-Chr8:5504754 | Cme11g00875 | Cme-Chr11:11738322 | 2.58E-113 | dispersed | |
Cme08g02321 | Cme-Chr8:30142078 | Cme11g00875 | Cme-Chr11:11738322 | 1.20E-115 | dispersed | |
Cme10g01333 | Cme-Chr10:15114723 | Cme11g00875 | Cme-Chr11:11738322 | 3.30E-108 | dispersed | |
Cme01g02350 | Cme-Chr1:31852549 | Cme11g00875 | Cme-Chr11:11738322 | 1.19E-114 | transposed | |
Cme01g00481 | Cme-Chr1:3468044 | Cme11g00875 | Cme-Chr11:11738322 | 7.55E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42169 | PF00096 | zf-C2H2 | 0.0018 | CL0361 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00875 | K25870 | - | csv:101211656 | 814.298 |