Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00875 ATGATTGAGAAAATGGCCGACCACGAACTCTCCGACTGCTTTCTCCAAATCCCCCTCACCGGATCCAACCCTTCTCTTCTCAAGAAGAAGCGAAACCTTCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTATCGCCAAAGACGTTGTTGGCAACGAACAGATTCGTTTGCGAAATATGCGGAAAAGGGTTTCAGAGAGACCAGAACTTGCAGCTACACCGGCGAGGGCATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAAGCAAAGAAAAGAGTGTATGTATGTCCTGAGAAAAGCTGTGTGCATCATCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAGAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCGAAGAGATATGCTGTACAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACACTATTTTCAAGGAGAGATAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATTTGAACAATAATTTAATGGGAGGATGGAGAGATCATGAAGAAACAGCAGGGGTATTCATGACTCAACATTTCGGTTCAACAATGAAGCCGGTTACAATGAAAATGAGCAGTAATAGTTTTCAAATGATTGGAGGAATGATGATGAATAATTCAGGAGGGGGAGTGTACGGTGAAGATTCAGTTTGGGGAAATCAAGTACAAATGGGAAATTATTATTATAATGAAAATCAAGGGTTAATGGTGAATGGAGGAGGAGTGGGGGTTTGTTCACTATACAGCCATGAATTTCAGCAAGTAAATGAAACCCAGAGGGGAAATATGTCAGCAACAGCTTTGTTACAAAAAGCTGCTGAAATTGGGGCAACTTCATCTTCTCCTTCTAACACTGTTACAAGATCTGCAGCCCCATCATTATCACTACTACAAATACAACAACAAGGGTTTTTGTTTAACAATGGGAGTGAGTTTTGTAATACAAACAATAATCCAATTGTTGTAGTTGAGAATAATGGGAGTGAGATGTACACTGCAAAACGGCGTCGTAGTCAGAGTGAATTTGAGTGTGGAAGTGGAAATGCAAGAACAGGAACAGGAACAGGAACAGGGGAGACAAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACTCCTCAACATCAATCAACGGATGGATTTAG 1278 41.08 MIEKMADHELSDCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLLATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNLNNNLMGGWRDHEETAGVFMTQHFGSTMKPVTMKMSSNSFQMIGGMMMNNSGGGVYGEDSVWGNQVQMGNYYYNENQGLMVNGGGVGVCSLYSHEFQQVNETQRGNMSATALLQKAAEIGATSSSPSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCNTNNNPIVVVENNGSEMYTAKRRRSQSEFECGSGNARTGTGTGTGETRDFLGVGAKTICHSSTSINGWI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11738322 11740137 + MELO3C019330.2.1 Cme11g00875 341538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00875 425 MobiDBLite consensus disorder prediction 380 401 - -
Cme11g00875 425 Gene3D Classic Zinc Finger 53 80 - -
Cme11g00875 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cme11g00875 425 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 418 - -
Cme11g00875 425 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cme11g00875 425 MobiDBLite consensus disorder prediction 385 401 - -
Cme11g00875 425 Gene3D Classic Zinc Finger 90 181 - -
Cme11g00875 425 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cme11g00875 425 PANTHER ZINC FINGER PROTEIN MAGPIE 24 418 - -
Cme11g00875 425 SMART c2h2final6 133 153 IPR013087 -
Cme11g00875 425 SMART c2h2final6 57 79 IPR013087 -
Cme11g00875 425 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00481 Cme11g00875 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02060 Cme-Chr1:29401304 Cme11g00875 Cme-Chr11:11738322 2.37E-98 dispersed
Cme01g02061 Cme-Chr1:29403562 Cme11g00875 Cme-Chr11:11738322 5.03E-07 dispersed
Cme02g00092 Cme-Chr2:707240 Cme11g00875 Cme-Chr11:11738322 1.64E-107 dispersed
Cme07g00220 Cme-Chr7:1456692 Cme11g00875 Cme-Chr11:11738322 5.19E-104 dispersed
Cme07g01703 Cme-Chr7:22570601 Cme11g00875 Cme-Chr11:11738322 4.85E-112 dispersed
Cme08g00831 Cme-Chr8:5504754 Cme11g00875 Cme-Chr11:11738322 2.58E-113 dispersed
Cme08g02321 Cme-Chr8:30142078 Cme11g00875 Cme-Chr11:11738322 1.20E-115 dispersed
Cme10g01333 Cme-Chr10:15114723 Cme11g00875 Cme-Chr11:11738322 3.30E-108 dispersed
Cme01g02350 Cme-Chr1:31852549 Cme11g00875 Cme-Chr11:11738322 1.19E-114 transposed
Cme01g00481 Cme-Chr1:3468044 Cme11g00875 Cme-Chr11:11738322 7.55E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42169 PF00096 zf-C2H2 0.0018 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00875 K25870 - csv:101211656 814.298