Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00927 ATGAAAAGTCGCATGAAAACTACGTCGTTTTTTAGTAGTGTTGATATGGATTACGCGCCACGTATAAAATCAGAATCCTCCTGCCGCCTCGACCTGACGCAAGAGAAAAACCAACTAAACGGAACACAAAGAGAGATAGAAGTTTTTTTTTTTCGCTCCGTTTCTTCGGAGATTTTCCCTTCGGCATCAACCCCAAAGATGCCAGCTGAAAACTCAATTCCATATGATCGAGATGCAGAGCCCTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCCGTAAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAAGTTCGATTGAGAAATTTTAGTGGGGACCCAGTGTTCATCAACCGTTTGAGATCTGAGGTTCAGCTGCTGAGCACTTTGAACAACAAATATATCATTGTTTGTTACAGTGTTTGGAATGATGATGAGCATAATACGTTGAATTTTATCACCGAGGTGTGCACATCAGGAAATCTAAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAATTGCAGTAACATTTTTGTCAATGGGAATATTGGCCAGGTTAAAATAGGTGATCTAGGATTTGCAGCTATAGTTGGCAGGAGCCATGCTGCACATTCAATCATAGGCACACCCGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCAATGTGTTTGCTCGAGATGGTTACTATGGAGATACCATACAGTGAATGCGATAGTGTTGCCAAGATATACAAGAAGGTAACAACTGGAATTAAGCCCCAAGCAATAACAAAAGTAACTGATGATGAAGTCAGAGCTTTCATTGAGAAGTGCATTGCGCAGCCAAGAGCAAGACCTTCCGCCTCTGAACTTCTCAAGGATCCCTTCTTCGATGAAGTCAGAGACGAAGATTCTGAACAGACTTCATAA 1089 41.97 MKSRMKTTSFFSSVDMDYAPRIKSESSCRLDLTQEKNQLNGTQREIEVFFFRSVSSEIFPSASTPKMPAENSIPYDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAITKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQTS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12867198 12871924 - MELO3C025989.2.1 Cme11g00927 341590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00927 362 MobiDBLite consensus disorder prediction 337 362 - -
Cme11g00927 362 Gene3D Transferase(Phosphotransferase) domain 1 175 356 - -
Cme11g00927 362 MobiDBLite consensus disorder prediction 345 362 - -
Cme11g00927 362 Pfam Protein kinase domain 96 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00927 362 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 67 354 - -
Cme11g00927 362 ProSiteProfiles Protein kinase domain profile. 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00927 362 SUPERFAMILY Protein kinase-like (PK-like) 85 351 IPR011009 -
Cme11g00927 362 Gene3D Phosphorylase Kinase; domain 1 76 173 - -
Cme11g00927 362 CDD STKc_WNK 90 350 - -
Cme11g00927 362 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 67 354 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00536 Cme11g00927 CCT
Cme01g00536 Cme11g00927 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02799 Cme-Chr6:35203988 Cme11g00927 Cme-Chr11:12867198 7.08E-164 dispersed
Cme11g00927 Cme-Chr11:12867198 Cme12g01658 Cme-Chr12:23634019 1.14E-119 dispersed
Cme11g00927 Cme-Chr11:12867198 Cme11g01446 Cme-Chr11:21379247 1.18E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65239 PF00069 Pkinase 2.10E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00927 K08867 - csv:101222153 603.594