Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00929 ATGCAAGCTTCTCAGCTTCATAGAGGTTCACATATGGCAAAGAGGTTATGTTATCAGCCACTTCAGGAAGTGGATGCCTGCTACTTCTCCCAATTTCAATCTTTAGGTCGCCAATTATACTCCAATGTTGGCAACCAAAGAGCTCACTTCAATTTTCAAGACATCAGTGATCAGTACTGCACTCTGGAGTCGTCCTCAGGAAGCCACGGCTATGCAGCTCACAACTCGACCTCAACTATCACTTTCTCACCAAATGCGAGTCCAGTATCGCAACAGGATTCTCGTTCAAATCCTTCTGATCAACATAATTCCCCTGACAATACGTATGGTTCCTCAGTAAGTGGATCCAGTATAACGGATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATGTGATATATAGTTTTGATAGTATCTACCAGGAGGGGACGGACAATCCAGAGATGGGAACTTGGGGACAAGTGATGGATGCTATTACTAAAGGAAACTTGAAAAAGATCCTAATAGCTTGTGCTAAAGCTGTATCAGATAATGATGCATTGATGGCACAATGGCTTATGGATGAGCTGCGCAAGATGGTGTCAGTTTGTGGTGAACCGATGCAGAGGTTGGGAGCTTATATGCTGGAGGGGTTGGTTGCACGGTTGGCTTCCTCAGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCTGCAAGAGCCGAGCTCCTCTCGTATATGCACCTTCTTTATGAGGTTTGCCCATACTTCAAATTTGGATACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATTATTGATTTCCAAATTTCTCAGGGTACTCAGTGGGTCACTTTGATTCAAGCATTTGCAGGTAGGCCTGGTGGGCCACCTCGCATTCGTATAACTGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGCGGGCTAGATATTGTTGGGAAGAGACTTTCCAAGTTAGCAAAGTTATTTAACGTGCCATTTGAGTTTCACTCCGCTGCCATTTCTGGCTGTGATGTTCAGCAAAAAAATCTAGGCATTCGCCGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAAGGTCTGTCTCCAAAGGTGGTGACACTTGTTGAACAAGAATCCAACACAAACACGGCTGCCTTCTTTCCTCGATTCATCGAGACACTAGATTACTACAATGCCATGTTTGAATCAATCGATGTTACTCTTCCAAGACAGCACAAGGAGCGAATTAACATTGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGAGCAGAGAGAGTGGAACGACACGAGCTACTTGGAAAGTGGAGACTGCGATTTGACATGGCAGGATTTACACCTTACCCATTAAGCTCGTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTACAGACTTGAAGAAAGAGAAGGGGCTTTGTATTTAGGGTGGATGAATAGGGATTTGGTTGCTTCCTGTGCATGGAAGTAA 1638 44.02 MQASQLHRGSHMAKRLCYQPLQEVDACYFSQFQSLGRQLYSNVGNQRAHFNFQDISDQYCTLESSSGSHGYAAHNSTSTITFSPNASPVSQQDSRSNPSDQHNSPDNTYGSSVSGSSITDDISDFRHKLLELETVMLGPDSDVIYSFDSIYQEGTDNPEMGTWGQVMDAITKGNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWVTLIQAFAGRPGGPPRIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFDMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMNRDLVASCAWK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12896452 12899705 - MELO3C025987.2.1 Cme11g00929 341592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00929 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 545 IPR005202 -
Cme11g00929 545 MobiDBLite consensus disorder prediction 75 116 - -
Cme11g00929 545 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 20 545 - -
Cme11g00929 545 Pfam GRAS domain family 175 545 IPR005202 -
Cme11g00929 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00709 Cme-Chr1:6656238 Cme11g00929 Cme-Chr11:12896452 7.07E-150 dispersed
Cme04g00788 Cme-Chr4:9540036 Cme11g00929 Cme-Chr11:12896452 1.12E-175 dispersed
Cme06g02786 Cme-Chr6:35108031 Cme11g00929 Cme-Chr11:12896452 0 dispersed
Cme08g00456 Cme-Chr8:2785012 Cme11g00929 Cme-Chr11:12896452 0 dispersed
Cme09g01928 Cme-Chr9:23359771 Cme11g00929 Cme-Chr11:12896452 1.11E-77 dispersed
Cme11g00929 Cme-Chr11:12896452 Cme12g00163 Cme-Chr12:1573520 2.34E-69 dispersed
Cme11g01318 Cme-Chr11:20006693 Cme11g00929 Cme-Chr11:12896452 1.92E-65 dispersed
Cme11g00929 Cme-Chr11:12896452 Cme04g02627 Cme-Chr4:32120122 3.06E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42173 PF03514 GRAS 1.10E-135 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00929 - - csv:101221914 1068.91