Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00934 ATGTGGAGGGGTTGCTCTGGTGGAGCTGGGGTTTTTCTCAAGCTCTCTAGGTACTTACTGAGGATGTCTTTGAGCTGCAAGTTCTCTACTGCTAACGGGAAATTTCCAGCTGGATTTAAGCTGAAGAAGGCTAAGGAACATCTGGGTTTGTTAAATTCTACCGGAAAATGGAAGAAGAAGAAGCTTCTCTGTCTTCGGATTTTTGTTGTAGTTATAGTTTTGAGCAGTTGGTTTCCCTTGCGTTGGTATAATGTGAATAATGGAACTAAACAGAAGGCCTCGAACTTGTTCGACGAAGAAACTCGAACTTTGCTGCGCCATTTTAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCTGACTCAGATCGAATGTCATCCATTGGTTGCACCAATGATTTTGGATCCGACACGTCACAGTTGAATGGAATTGCCTGTGCCCTAAGGCTACTGTACTGGGAGCAAGGTTTGCACAAAGAGTATGTATGGGCTGAAGGAAGTGCAGATTCCAATGTTGGGAAGTGCCCTATCCGAACTGAGAAGATCACTGATAATTCCAGACAATTATTCTCTGATAACATAACTGTTCCATTTGCTACAGATTTATCCGTCTCTTTACTCTCTACTGGAAATCAGCTTTGTAAAAAGATAATTGAACAAGCAGGAGTTCTAACATGCCTTTTAAGAAAGAACTTGAAGAATTTCTCTAGTTTGTTGATTGGATGTTTTTGCATTCTCCTTGGAGTGATAGTGTTCCAAAAAATATCTGGTTTCCATCTAAAATTGTGGAACAAGAAACATCGAAAGTCAAATCAACCATTGGATCATCAACAGTGGGTCTTACTACGAAGAAAGCAACATCAACAAGTCAAAGAGTCTCCTAAAGGAGCTGGGAAATGGCGGAAGGTGCTTCTAAGAATATTTATTGTAGTTGGAATCGTTGGGTCCATTTGGTTATTTTGGTACCTGAACAAGACAGCCATTTTGAGAAGAGAAGAAACCCTTGCAAATATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCAGTTCTTACCTCTACCTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACAGCCTTTGAAAGACCACTGACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGGGAGCATTTTGAGAGGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAATCCAGAAAATTTGGAACCTGCACCAATTAGAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTGGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATCTTGCGAGCTAGGGCTTCTGGAAAGGGTGTGCTTACATCTCCTTTTAAACTTTTGAAATCTAATCACCTTGGAGTGGTCCTCACATTTGCTGTCTATAGCACTGACCTTCCACCAGATGCTACTCCTGAGCAGCGTATTGAAGCTACTGTTGGCTATCTAGGTGCCTCATATGATATCCCCTCACTGGTGGAAAAACTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGAATCTGCTCCCATTAACATGTATGGTTCTGATTTTACCGATACTGGGCTACCGCATATTAGTAAACTTGATTTTGGGGATCCTTTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCTGTAGGCGTCCTAATCATTACCTTGCTGGTTGGCCATATTTTTCATGCAGCTATAAGTCGGATTGCAAAAGTGGAGAATGATTTTCACAAGATGATGGATCTTAAAAGCCTTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTAAAATTACTGATGGACACTAACCTTGATTCAAATCAACTGGATTTCGCTCGGACTGCCCACGAGAGCGGAAAAGATTTGATATCACTCATAAATAAGGTTCTTGATCAAGCTAAGATAGAGTCAGGAAGTCTTGAACTTGAATCTGTACCCTTTGATCTGCGTGCTATAGTTGATAATGTGCTCTCACCTTTTTCACTTAAATCCAACGACAAGGGAATTGAGTTGGCTGTTTATGTTTCTGACTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAACTCACTCAAGTTTACTCACAATAAGGGACACATACTAGTCTCAGTGCATCTGGCTGATGAAGTGAGAGGCACAGTTGATTTCATGGACATTGTACTCAAACAAGGCTCATATATTGTTGGAGATACATCAAACAATAGTTGCACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAGAGCTGGGAAGATTTCAAAAAGTTCGGCAGGACAGATGTGGAAGAATCCAAAATGATTAGAATACTTGTGACTGTTGAGGATACAGGTGTAGGGATTCCCCAAAACGCACAAAGCCGAATTTTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACATATGGTGGCACTGGAATAGGATTGAGTATTAGCAAACGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTATCTTTCCAGAAAGGGGAAACAAGTATTTTGGATACCAGGCGGCCACAGTATGACGTGGGTGTTGGAGAGTTCCAGGGGCTAAGAGCACTAGTAATTGATAATAGCTGCATTCGAGCGGAGGTTACAAGATATCATTTGCAGAGGCTGGGGATTTCTGTTGATATAACTCTGAGTGCAGAATCTGCTTATCAATACCTATCCAATACCTCCCACACAAGAGCATCAACACAATTGGCCATGATTCTTATAGATAGAGACATTTGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCATGTGGATAGAAGTGTGACAAATGTTCAGATGAATGGTCCAAAGCTCTTTCTCTTGGCAACCCCCAAAAGCTCCAATGAGCACTATGAACTTAAATCTTCTGGTCATGTAAATAATGTGATAAGTAAACCTCTTCAGTTAGACGTGTTGACCAGTTACTTTCGTGAAGCCTTTGGGATTGAGAAGAGGAATCAAGTAATCATTAAAAAACCATCTACTCTTAGGAATCTGCTGAAAGAAAAGCGTATTTTGGTTGTGGATGACAATGCAGTAAACATAAGGGTGGCAGAAGGTGCACTCAAAAAATATGGAGCCGTTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAATCCTCCACATAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAATGTGGGGTGAATGCGAAAATTACATCTGGAGAAGTGTCAATTGAGAACAATAAGATCCATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGATATGAGTGAGGAGTGCTTGAAGTGTGGAATGGATGGTTATGTAGCTAAGCCATTTGAAGAGGAGCAACTTTATTCAGCTGTAGCACGTTTTTTTGAGACTGCTTGA 3786 41.34 MWRGCSGGAGVFLKLSRYLLRMSLSCKFSTANGKFPAGFKLKKAKEHLGLLNSTGKWKKKKLLCLRIFVVVIVLSSWFPLRWYNVNNGTKQKASNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSIGCTNDFGSDTSQLNGIACALRLLYWEQGLHKEYVWAEGSADSNVGKCPIRTEKITDNSRQLFSDNITVPFATDLSVSLLSTGNQLCKKIIEQAGVLTCLLRKNLKNFSSLLIGCFCILLGVIVFQKISGFHLKLWNKKHRKSNQPLDHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIFIVVGIVGSIWLFWYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFERMHGWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTDTGLPHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDFHKMMDLKSLAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFARTAHESGKDLISLINKVLDQAKIESGSLELESVPFDLRAIVDNVLSPFSLKSNDKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSLKFTHNKGHILVSVHLADEVRGTVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWEDFKKFGRTDVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRRPQYDVGVGEFQGLRALVIDNSCIRAEVTRYHLQRLGISVDITLSAESAYQYLSNTSHTRASTQLAMILIDRDIWDKKVGLKFHLLFKEHVDRSVTNVQMNGPKLFLLATPKSSNEHYELKSSGHVNNVISKPLQLDVLTSYFREAFGIEKRNQVIIKKPSTLRNLLKEKRILVVDDNAVNIRVAEGALKKYGAVVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIENNKIHWHTPIFAMTADLIQDMSEECLKCGMDGYVAKPFEEEQLYSAVARFFETA 1261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13012937 13022673 - MELO3C025982.2.1 Cme11g00934 341597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00934 1261 SUPERFAMILY CheY-like 1120 1258 IPR011006 -
Cme11g00934 1261 SUPERFAMILY CheY-like 962 1099 IPR011006 -
Cme11g00934 1261 CDD HATPase_EvgS-ArcB-TorS-like 777 939 - -
Cme11g00934 1261 ProSiteProfiles Response regulatory domain profile. 1123 1258 IPR001789 GO:0000160
Cme11g00934 1261 Pfam His Kinase A (phospho-acceptor) domain 660 725 IPR003661 GO:0000155|GO:0007165
Cme11g00934 1261 Gene3D - 629 723 - -
Cme11g00934 1261 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 714 939 IPR036890 -
Cme11g00934 1261 Gene3D - 326 378 - -
Cme11g00934 1261 Gene3D - 85 127 - -
Cme11g00934 1261 CDD REC_hyHK_CKI1_RcsC-like 1124 1254 - -
Cme11g00934 1261 Pfam Response regulator receiver domain 1124 1254 IPR001789 GO:0000160
Cme11g00934 1261 ProSiteProfiles Response regulatory domain profile. 967 1099 IPR001789 GO:0000160
Cme11g00934 1261 SMART REC_2 1122 1254 IPR001789 GO:0000160
Cme11g00934 1261 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 772 941 IPR003594 -
Cme11g00934 1261 PANTHER TWO-COMPONENT HISTIDINE KINASE 288 1259 - -
Cme11g00934 1261 PRINTS Bacterial sensor protein C-terminal signature 868 882 IPR004358 GO:0016310|GO:0016772
Cme11g00934 1261 PRINTS Bacterial sensor protein C-terminal signature 886 896 IPR004358 GO:0016310|GO:0016772
Cme11g00934 1261 PRINTS Bacterial sensor protein C-terminal signature 903 921 IPR004358 GO:0016310|GO:0016772
Cme11g00934 1261 PRINTS Bacterial sensor protein C-terminal signature 927 940 IPR004358 GO:0016310|GO:0016772
Cme11g00934 1261 PANTHER HISTIDINE KINASE 2 288 1259 - -
Cme11g00934 1261 SMART HisKA_10 660 725 IPR003661 GO:0000155|GO:0007165
Cme11g00934 1261 Pfam CHASE domain 378 572 IPR006189 -
Cme11g00934 1261 ProSiteProfiles CHASE domain profile. 375 599 IPR006189 -
Cme11g00934 1261 SMART CHASE_2 375 574 IPR006189 -
Cme11g00934 1261 SMART HKATPase_4 772 943 IPR003594 -
Cme11g00934 1261 Gene3D - 1116 1261 - -
Cme11g00934 1261 Gene3D CHASE domain 379 606 IPR042240 -
Cme11g00934 1261 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 652 726 IPR036097 GO:0000155|GO:0007165
Cme11g00934 1261 Gene3D - 724 946 IPR036890 -
Cme11g00934 1261 ProSiteProfiles Histidine kinase domain profile. 667 943 IPR005467 -
Cme11g00934 1261 CDD HisKA 660 721 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00518 Cme-Chr6:3263120 Cme11g00934 Cme-Chr11:13012937 9.75E-08 dispersed
Cme10g01141 Cme-Chr10:10840410 Cme11g00934 Cme-Chr11:13012937 0 dispersed
Cme11g00934 Cme-Chr11:13012937 Cme11g02319 Cme-Chr11:30244922 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42174 PF03924 CHASE 3.10E-36 CL0165 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00934 K14489 - csv:101221294 2394.77