Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00968 ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCTAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGTGTATCGGAGTTCATAAGCTTCATAACAGGAGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGCTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAAGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTACTGCTGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCATCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATTGGCGGCGGGAAAGGAGGAAGTGGTGCTTCCGGCACCGGGCACCGGTAG 603 51.74 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGGGKGGSGASGTGHR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13736069 13737746 + MELO3C025951.2.1 Cme11g00968 341631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00968 200 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g00968 200 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme11g00968 200 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme11g00968 200 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cme11g00968 200 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cme11g00968 200 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cme11g00968 200 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cme11g00968 200 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982
Cme11g00968 200 MobiDBLite consensus disorder prediction 1 21 - -
Cme11g00968 200 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982
Cme11g00968 200 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 175 - -
Cme11g00968 200 MobiDBLite consensus disorder prediction 114 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00968 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101219076 255.758
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00556 Cme11g00968 CCT
Cme01g00556 Cme11g00968 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00256 Cme-Chr5:1882018 Cme11g00968 Cme-Chr11:13736069 9.79E-10 dispersed
Cme06g02755 Cme-Chr6:34811100 Cme11g00968 Cme-Chr11:13736069 5.91E-64 dispersed
Cme07g01729 Cme-Chr7:22788772 Cme11g00968 Cme-Chr11:13736069 6.71E-64 dispersed
Cme11g00968 Cme-Chr11:13736069 Cme02g00096 Cme-Chr2:726817 2.54E-28 dispersed
Cme11g00968 Cme-Chr11:13736069 Cme04g02561 Cme-Chr4:31731751 5.59E-62 transposed
Cme11g00968 Cme-Chr11:13736069 Cme10g00818 Cme-Chr10:5367123 5.71E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g705 . Blo15g00440 . . Bpe12g00177 . Bma03g00666 Bma08g00680 . Cmo19g00866 . . . . Sed05g2121 Cpe15g00683 Cpe04g00651 Bhi05g01484 Tan02g0498 Cmetu01g1553 Lac12g0401 Hepe02g0314 . . Cla02g00296 Cam02g0305 Cec02g0305 Cco02g0308 Clacu02g0297 Cmu02g0294 Cre02g0628 . . Cone8ag1365 . . Csa07g00248 . Cme01g00556 . Blo13g00439 . Bda15g00992 . . . . . . . . Cma19g00848 Car11g01436 Car19g00661 . . . . . . . . . Cla02g00899 Cam02g0911 Cec02g0951 Cco02g1012 Clacu02g0948 Cmu02g0921 Cre02g1245 Lsi11g01342 Csa06g00967 Chy01g00533 Cme11g00968
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02771 . 9 149 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.2 7.4e-48 187.6
Cme11g00968 CCT,ECH 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.0e-38 154.5
Cme06g02771 . 33 171 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.4e-49 193.4
Cme07g01729 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.9 8.4e-39 157.5
Cme11g00968 CCT,ECH 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 3.5e-57 218.0
Cme06g02755 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Cme07g01729 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.0 2.5e-47 185.3
Cme04g02561 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cme10g00818 . 11 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.5 8.5e-43 170.2
Cme01g02349 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.8e-37 152.5
Cme10g00818 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.7 3.4e-49 191.4
Cme04g02561 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.9e-48 188.3
Cme11g00968 CCT,ECH 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cme06g02755 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.9e-42 166.8
Cme07g01729 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.8 8.9e-42 166.8
Cme01g02349 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.7e-38 155.2
Cme01g02349 . 44 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 9.9e-44 173.3
Cme06g02755 . 19 129 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.5 1.1e-39 159.8
Cme11g00968 CCT,ECH 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.6e-39 157.5
Cme07g01729 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 1.4e-37 152.9
Cme10g00818 . 1 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.3 2.3e-54 208.8
Cme04g02561 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 84.9 1.7e-49 192.6
Cme11g00968 CCT,ECH 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cme07g01729 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.5 1.7e-41 166.0
Cme06g02755 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.5e-41 164.1
Cme01g02349 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.5e-37 150.6
Cme07g01729 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.2 4.1e-45 178.3
Cme11g00968 CCT,ECH 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.5e-44 175.3
Cme04g02561 . 7 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.4 7.3e-42 167.5
Cme06g02755 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Cme01g02349 . 22 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.0e-39 159.5
Cme10g00818 . 28 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 5.8e-39 157.9
Cme11g00968 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 5.3e-52 201.1
Cme06g02755 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.9e-50 194.5
Cme07g01729 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.6 2.1e-45 179.1
Cme10g00818 . 14 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 67.9 2.4e-44 175.6
Cme04g02561 . 11 115 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 6.5e-42 167.5
Cme01g02349 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.1e-38 156.8
Cme10g00818 . 12 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.7 6.8e-54 207.2
Cme04g02561 . 12 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 89.6 1.1e-48 189.9
Cme11g00968 CCT,ECH 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.6e-45 178.7
Cme06g02755 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Cme07g01729 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 2.3e-41 165.6
Cme01g02349 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.5e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42176 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00968 Cme_Chr11 FPKM 8.805307 8.033179 5.815001 9.582136 10.305636 6.39944 10.201862 8.660197 7.268912 6.467898