Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00968 | ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCTAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGTGTATCGGAGTTCATAAGCTTCATAACAGGAGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGCTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAAGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTACTGCTGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCATCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATTGGCGGCGGGAAAGGAGGAAGTGGTGCTTCCGGCACCGGGCACCGGTAG | 603 | 51.74 | MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGGGKGGSGASGTGHR | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13736069 | 13737746 | + | MELO3C025951.2.1 | Cme11g00968 | 341631 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00968 | 200 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cme11g00968 | 200 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cme11g00968 | 200 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 175 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cme11g00968 | 200 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Cme11g00968 | 200 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Cme11g00968 | 200 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - | |
Cme11g00968 | 200 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Cme11g00968 | 200 | SUPERFAMILY | Histone-fold | 24 | 126 | IPR009072 | GO:0046982 | |
Cme11g00968 | 200 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cme11g00968 | 200 | Gene3D | Histone, subunit A | 15 | 132 | IPR009072 | GO:0046982 | |
Cme11g00968 | 200 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 1 | 175 | - | - | |
Cme11g00968 | 200 | MobiDBLite | consensus disorder prediction | 114 | 143 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g00556 | Cme11g00968 | CCT | |
Cme01g00556 | Cme11g00968 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g00256 | Cme-Chr5:1882018 | Cme11g00968 | Cme-Chr11:13736069 | 9.79E-10 | dispersed | |
Cme06g02755 | Cme-Chr6:34811100 | Cme11g00968 | Cme-Chr11:13736069 | 5.91E-64 | dispersed | |
Cme07g01729 | Cme-Chr7:22788772 | Cme11g00968 | Cme-Chr11:13736069 | 6.71E-64 | dispersed | |
Cme11g00968 | Cme-Chr11:13736069 | Cme02g00096 | Cme-Chr2:726817 | 2.54E-28 | dispersed | |
Cme11g00968 | Cme-Chr11:13736069 | Cme04g02561 | Cme-Chr4:31731751 | 5.59E-62 | transposed | |
Cme11g00968 | Cme-Chr11:13736069 | Cme10g00818 | Cme-Chr10:5367123 | 5.71E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42176 | PF00808 | CBFD_NFYB_HMF | 1.90E-27 | CL0012 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00968 | K08065 | - | csv:101219076 | 255.758 |