Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00968 ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCTAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGTGTATCGGAGTTCATAAGCTTCATAACAGGAGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGCTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAAGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTACTGCTGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCATCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATTGGCGGCGGGAAAGGAGGAAGTGGTGCTTCCGGCACCGGGCACCGGTAG 603 51.74 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGGGKGGSGASGTGHR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13736069 13737746 + MELO3C025951.2.1 Cme11g00968 341631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00968 200 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g00968 200 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cme11g00968 200 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cme11g00968 200 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cme11g00968 200 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cme11g00968 200 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cme11g00968 200 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cme11g00968 200 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982
Cme11g00968 200 MobiDBLite consensus disorder prediction 1 21 - -
Cme11g00968 200 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982
Cme11g00968 200 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 175 - -
Cme11g00968 200 MobiDBLite consensus disorder prediction 114 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00556 Cme11g00968 CCT
Cme01g00556 Cme11g00968 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00256 Cme-Chr5:1882018 Cme11g00968 Cme-Chr11:13736069 9.79E-10 dispersed
Cme06g02755 Cme-Chr6:34811100 Cme11g00968 Cme-Chr11:13736069 5.91E-64 dispersed
Cme07g01729 Cme-Chr7:22788772 Cme11g00968 Cme-Chr11:13736069 6.71E-64 dispersed
Cme11g00968 Cme-Chr11:13736069 Cme02g00096 Cme-Chr2:726817 2.54E-28 dispersed
Cme11g00968 Cme-Chr11:13736069 Cme04g02561 Cme-Chr4:31731751 5.59E-62 transposed
Cme11g00968 Cme-Chr11:13736069 Cme10g00818 Cme-Chr10:5367123 5.71E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42176 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00968 K08065 - csv:101219076 255.758