Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00980 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAGAGGTCAATGGTTTACTGCCGATCTGACGCTGCGTGTTTGTGCTTATCATGTGATCGTAATGTCCATTCTGCTAACGCCTTGTCGAGGCGACATACAAGAACATTGTTGTGTGAAAGATGCCATTTGCAACCCTCCACGGTAAGGTGTATTGAAGAGAGAGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCGGCTGCAGAACTTTCTTGCATCTGGTCTTTTGTTTTGGATGTTCCATCCGTAAATGATGCTTGTGAGAAAGAACTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGCCTTTCGGAGAACAACGCTGGTCAAAGAATGCCCCGGTCAACTGAAGCCAGTGATGTTTGTAGCAGAGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCTTTGGCTCTAGGCCTCACACTTCAGATCAGTCAGTCGAATTGGATAATGTGGCTTTACCCAAGGATCTTTTGAGGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGAGGATGCCGATCTTTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGCATGAGCCTTAATCATTCTGAAGAGTTTTTCGAGAATGGTGGAATTGATAGGTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTCCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCGTGGGAGTGGTCCAACAAATGCAGCCAGCTTACAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCCATTCTCTGTTTCAATTCAAGGCAAGCCCAGTCGGGTATGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGTTTCTAATGGGTGAGCCTCCATGGTGTGCACCTAGCACTGAAAGTTCCTTCCCATCTACTGATCGCAATAGTGCTGTTCAGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCGTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1281 45.98 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRCIEERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSLSENNAGQRMPRSTEASDVCSREKSNVLVGSSSLFGSRPHTSDQSVELDNVALPKDLLRHHIFGMQFCCPGTKVAEFCGEDADLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDRFFEAKGLSFEDSVSHSAVAAEGSSVGVVQQMQPAYSNGASADSVMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMFLMGEPPWCAPSTESSFPSTDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13935781 13940717 + MELO3C025940.2.1 Cme11g00980 341643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00980 426 Pfam CCT motif 369 411 IPR010402 GO:0005515
Cme11g00980 426 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Cme11g00980 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 425 - -
Cme11g00980 426 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme11g00980 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 425 - -
Cme11g00980 426 MobiDBLite consensus disorder prediction 359 379 - -
Cme11g00980 426 CDD Bbox1_BBX-like 47 91 - -
Cme11g00980 426 CDD Bbox1_BBX-like 5 47 - -
Cme11g00980 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00980 - - - csv:101216401 790.801
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01520 Cme-Chr2:22258730 Cme11g00980 Cme-Chr11:13935781 1.08E-30 dispersed
Cme07g01072 Cme-Chr7:13281716 Cme11g00980 Cme-Chr11:13935781 1.12E-12 dispersed
Cme11g00980 Cme-Chr11:13935781 Cme02g01521 Cme-Chr2:22279407 2.13E-08 dispersed
Cme07g01930 Cme-Chr7:24509783 Cme11g00980 Cme-Chr11:13935781 1.96E-14 transposed
Cme10g00220 Cme-Chr10:1480748 Cme11g00980 Cme-Chr11:13935781 3.84E-08 transposed
Cme11g00764 Cme-Chr11:9529516 Cme11g00980 Cme-Chr11:13935781 3.01E-29 transposed
Cme01g00573 Cme-Chr1:4356805 Cme11g00980 Cme-Chr11:13935781 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01557 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.4e-82 303.5
Cme02g01521 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.4e-56 217.2
Cme02g01521 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.4 3.6e-70 262.3
Cme02g01520 CCT 15 364 C2C2-CO-like Transcription Factor Family AT5G57660 51.9 6.1e-62 235.0
Cme03g01557 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.3e-53 206.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 8.1e-89 324.3
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 1.2e-87 320.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme03g01907 . 1 209 C2C2-CO-like Transcription Factor Family AT1G75540 51.7 2.0e-54 209.9
Cme01g01353 CCT,ECH 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 2.8e-48 189.5
Cme11g00162 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 54.5 3.7e-45 179.1
Cme07g01351 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 51.1 5.5e-78 288.1
Cme08g00909 . 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 81.7 3.8e-49 191.4
Cme08g00909 . 1 136 C2C2-CO-like Transcription Factor Family AT4G38960 70.3 3.6e-50 194.9
Cme01g01353 CCT,ECH 1 205 C2C2-CO-like Transcription Factor Family AT4G39070 54.0 4.4e-51 198.4
Cme03g01907 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.4 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42177 PF06203 CCT 4.60E-16 CL0281 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00980 Cme_Chr11 FPKM 5.642534 4.121717 7.822165 8.817663 5.492765 4.990891 6.803961 14.399241 14.17708 13.088265