Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00980 | ATGGGTTTCATGTGTGATTTTTGTGGGGATCAGAGGTCAATGGTTTACTGCCGATCTGACGCTGCGTGTTTGTGCTTATCATGTGATCGTAATGTCCATTCTGCTAACGCCTTGTCGAGGCGACATACAAGAACATTGTTGTGTGAAAGATGCCATTTGCAACCCTCCACGGTAAGGTGTATTGAAGAGAGAGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCGGCTGCAGAACTTTCTTGCATCTGGTCTTTTGTTTTGGATGTTCCATCCGTAAATGATGCTTGTGAGAAAGAACTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGCCTTTCGGAGAACAACGCTGGTCAAAGAATGCCCCGGTCAACTGAAGCCAGTGATGTTTGTAGCAGAGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCTTTGGCTCTAGGCCTCACACTTCAGATCAGTCAGTCGAATTGGATAATGTGGCTTTACCCAAGGATCTTTTGAGGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGAGGATGCCGATCTTTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGCATGAGCCTTAATCATTCTGAAGAGTTTTTCGAGAATGGTGGAATTGATAGGTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTCCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCGTGGGAGTGGTCCAACAAATGCAGCCAGCTTACAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCCATTCTCTGTTTCAATTCAAGGCAAGCCCAGTCGGGTATGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGTTTCTAATGGGTGAGCCTCCATGGTGTGCACCTAGCACTGAAAGTTCCTTCCCATCTACTGATCGCAATAGTGCTGTTCAGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCGTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA | 1281 | 45.98 | MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRCIEERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSLSENNAGQRMPRSTEASDVCSREKSNVLVGSSSLFGSRPHTSDQSVELDNVALPKDLLRHHIFGMQFCCPGTKVAEFCGEDADLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDRFFEAKGLSFEDSVSHSAVAAEGSSVGVVQQMQPAYSNGASADSVMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMFLMGEPPWCAPSTESSFPSTDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13935781 | 13940717 | + | MELO3C025940.2.1 | Cme11g00980 | 341643 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00980 | 426 | Pfam | CCT motif | 369 | 411 | IPR010402 | GO:0005515 | |
Cme11g00980 | 426 | ProSiteProfiles | CCT domain profile. | 369 | 411 | IPR010402 | GO:0005515 | |
Cme11g00980 | 426 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE | 1 | 425 | - | - | |
Cme11g00980 | 426 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cme11g00980 | 426 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 1 | 425 | - | - | |
Cme11g00980 | 426 | MobiDBLite | consensus disorder prediction | 359 | 379 | - | - | |
Cme11g00980 | 426 | CDD | Bbox1_BBX-like | 47 | 91 | - | - | |
Cme11g00980 | 426 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cme11g00980 | 426 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01520 | Cme-Chr2:22258730 | Cme11g00980 | Cme-Chr11:13935781 | 1.08E-30 | dispersed | |
Cme07g01072 | Cme-Chr7:13281716 | Cme11g00980 | Cme-Chr11:13935781 | 1.12E-12 | dispersed | |
Cme11g00980 | Cme-Chr11:13935781 | Cme02g01521 | Cme-Chr2:22279407 | 2.13E-08 | dispersed | |
Cme07g01930 | Cme-Chr7:24509783 | Cme11g00980 | Cme-Chr11:13935781 | 1.96E-14 | transposed | |
Cme10g00220 | Cme-Chr10:1480748 | Cme11g00980 | Cme-Chr11:13935781 | 3.84E-08 | transposed | |
Cme11g00764 | Cme-Chr11:9529516 | Cme11g00980 | Cme-Chr11:13935781 | 3.01E-29 | transposed | |
Cme01g00573 | Cme-Chr1:4356805 | Cme11g00980 | Cme-Chr11:13935781 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42177 | PF06203 | CCT | 4.60E-16 | CL0281 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00980 | - | - | csv:101216401 | 790.801 |