Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00980 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAGAGGTCAATGGTTTACTGCCGATCTGACGCTGCGTGTTTGTGCTTATCATGTGATCGTAATGTCCATTCTGCTAACGCCTTGTCGAGGCGACATACAAGAACATTGTTGTGTGAAAGATGCCATTTGCAACCCTCCACGGTAAGGTGTATTGAAGAGAGAGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCGGCTGCAGAACTTTCTTGCATCTGGTCTTTTGTTTTGGATGTTCCATCCGTAAATGATGCTTGTGAGAAAGAACTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGCCTTTCGGAGAACAACGCTGGTCAAAGAATGCCCCGGTCAACTGAAGCCAGTGATGTTTGTAGCAGAGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCTTTGGCTCTAGGCCTCACACTTCAGATCAGTCAGTCGAATTGGATAATGTGGCTTTACCCAAGGATCTTTTGAGGCATCACATTTTTGGCATGCAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGAGGATGCCGATCTTTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGCATGAGCCTTAATCATTCTGAAGAGTTTTTCGAGAATGGTGGAATTGATAGGTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTCCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCGTGGGAGTGGTCCAACAAATGCAGCCAGCTTACAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCCATTCTCTGTTTCAATTCAAGGCAAGCCCAGTCGGGTATGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGTTTCTAATGGGTGAGCCTCCATGGTGTGCACCTAGCACTGAAAGTTCCTTCCCATCTACTGATCGCAATAGTGCTGTTCAGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCGTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1281 45.98 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRCIEERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSLSENNAGQRMPRSTEASDVCSREKSNVLVGSSSLFGSRPHTSDQSVELDNVALPKDLLRHHIFGMQFCCPGTKVAEFCGEDADLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDRFFEAKGLSFEDSVSHSAVAAEGSSVGVVQQMQPAYSNGASADSVMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMFLMGEPPWCAPSTESSFPSTDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13935781 13940717 + MELO3C025940.2.1 Cme11g00980 341643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00980 426 Pfam CCT motif 369 411 IPR010402 GO:0005515
Cme11g00980 426 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Cme11g00980 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 425 - -
Cme11g00980 426 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme11g00980 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 425 - -
Cme11g00980 426 MobiDBLite consensus disorder prediction 359 379 - -
Cme11g00980 426 CDD Bbox1_BBX-like 47 91 - -
Cme11g00980 426 CDD Bbox1_BBX-like 5 47 - -
Cme11g00980 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01520 Cme-Chr2:22258730 Cme11g00980 Cme-Chr11:13935781 1.08E-30 dispersed
Cme07g01072 Cme-Chr7:13281716 Cme11g00980 Cme-Chr11:13935781 1.12E-12 dispersed
Cme11g00980 Cme-Chr11:13935781 Cme02g01521 Cme-Chr2:22279407 2.13E-08 dispersed
Cme07g01930 Cme-Chr7:24509783 Cme11g00980 Cme-Chr11:13935781 1.96E-14 transposed
Cme10g00220 Cme-Chr10:1480748 Cme11g00980 Cme-Chr11:13935781 3.84E-08 transposed
Cme11g00764 Cme-Chr11:9529516 Cme11g00980 Cme-Chr11:13935781 3.01E-29 transposed
Cme01g00573 Cme-Chr1:4356805 Cme11g00980 Cme-Chr11:13935781 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42177 PF06203 CCT 4.60E-16 CL0281 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00980 - - csv:101216401 790.801