Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00985 ATGGGACTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGTGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCCTCGTCCTCAGCTACATTACCTTCGTCACCAGATTCTATGGAGAATGCTCCCGAGTCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTCCGCAGCCGAATCCCGGCAATTCTTTTCGACAAAGTTCGAAGCTGTAAATGGCTTGAGCACGATTGCTCAGTTTGCCTAACCCAATTTGAACCTGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGCGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCTTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGA 471 45.86 MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW 156
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 14036352 14038306 + MELO3C013454.2.1 Cme11g00985 341648
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00985 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 156 - -
Cme11g00985 156 PANTHER - 1 156 IPR044249 -
Cme11g00985 156 Pfam Ring finger domain 99 142 IPR001841 -
Cme11g00985 156 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Cme11g00985 156 SUPERFAMILY RING/U-box 89 148 - -
Cme11g00985 156 SMART ring_2 100 141 IPR001841 -
Cme11g00985 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00566 Cme-Chr1:4224537 Cme11g00985 Cme-Chr11:14036352 1.16E-66 dispersed
Cme01g00567 Cme-Chr1:4239755 Cme11g00985 Cme-Chr11:14036352 4.18E-63 dispersed
Cme10g00580 Cme-Chr10:3728348 Cme11g00985 Cme-Chr11:14036352 8.41E-20 dispersed
Cme11g00985 Cme-Chr11:14036352 Cme06g00166 Cme-Chr6:1005706 1.63E-13 dispersed
Cme11g00985 Cme-Chr11:14036352 Cme11g02182 Cme-Chr11:29147180 4.95E-15 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00985 K16285 - csv:101216645 315.464