Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g00985 | ATGGGACTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGTGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCCTCGTCCTCAGCTACATTACCTTCGTCACCAGATTCTATGGAGAATGCTCCCGAGTCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTCCGCAGCCGAATCCCGGCAATTCTTTTCGACAAAGTTCGAAGCTGTAAATGGCTTGAGCACGATTGCTCAGTTTGCCTAACCCAATTTGAACCTGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGCGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCTTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGA | 471 | 45.86 | MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSSATLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHSVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW | 156 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 14036352 | 14038306 | + | MELO3C013454.2.1 | Cme11g00985 | 341648 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g00985 | 156 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 156 | - | - | |
| Cme11g00985 | 156 | PANTHER | - | 1 | 156 | IPR044249 | - | |
| Cme11g00985 | 156 | Pfam | Ring finger domain | 99 | 142 | IPR001841 | - | |
| Cme11g00985 | 156 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
| Cme11g00985 | 156 | SUPERFAMILY | RING/U-box | 89 | 148 | - | - | |
| Cme11g00985 | 156 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
| Cme11g00985 | 156 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 147 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00566 | Cme-Chr1:4224537 | Cme11g00985 | Cme-Chr11:14036352 | 1.16E-66 | dispersed | |
| Cme01g00567 | Cme-Chr1:4239755 | Cme11g00985 | Cme-Chr11:14036352 | 4.18E-63 | dispersed | |
| Cme10g00580 | Cme-Chr10:3728348 | Cme11g00985 | Cme-Chr11:14036352 | 8.41E-20 | dispersed | |
| Cme11g00985 | Cme-Chr11:14036352 | Cme06g00166 | Cme-Chr6:1005706 | 1.63E-13 | dispersed | |
| Cme11g00985 | Cme-Chr11:14036352 | Cme11g02182 | Cme-Chr11:29147180 | 4.95E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g00985 | K16285 | - | csv:101216645 | 315.464 |