Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01002 ATGGATGGATTTAGGAGTAACGACAACAAACAAGGCGTTGAAAGGCATTCCCGCACCGAGATGGGGTCGTTAGGGGAGAAAACTATACTGGAATTTGAAGATGAGAGCCTTGTTAGTCCAGTATCATTAAATAGAAAGAACTTTTCGATTGAGGGATCTATCCATAGTTCTCCCTTGGGTGGTGGTTCGCAGAAACTTTGTTGCAGTAACATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTCGTTTTCTCGGCTAAAATAAACCTTCTCATGCCTTTTGGCCCTTTAGCAATAATAGTCAGCACCTTGTCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTTCTTGGATGTGCATTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGAGAGCAGGTTTTTAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCTACACACACAGAGTTGCACTCTGGAAAGTCAGAGCTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGTGATAAGAACTTATATCTCCCAGTCGATGAGGTGGATAATGAAGGGAGTTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCAATTGTTTGGCTGTCAATCTTGACCATATGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATCGAGGGGGCATCGGTTGCAATGAACATACCTGTAGCATTCATCAGTGTTATTCTGCTACCTATTGTTGGGAATGCTGCTGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGATAAGCTTGACATTTCTTTGGGTGTTGCTATAGGATCATCGACACAGATATCTATGTTTGGGATTCCCTTTTGTGTGGTCATTGGTTGGATCATGGGATGTCCGATGGACTTGAATTTTCAACTTTTTGAAACCGCAACGCTTTTCATCACAGTCATTGTCGTGGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTAATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCATCAGTTGGAGACAAAACCCGAAAACCTGGTGTATGA 1374 41.99 MDGFRSNDNKQGVERHSRTEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGSIHSSPLGGGSQKLCCSNMKNRVFGSIKIVVFSAKINLLMPFGPLAIIVSTLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDNEGSSDDEEAPEISMWESIVWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGDKTRKPGV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14304866 14309727 + MELO3C013463.2.1 Cme11g01002 341665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01002 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 14 456 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cme11g01002 457 PANTHER VACUOLAR CATION/PROTON EXCHANGER 14 456 - -
Cme11g01002 457 Pfam Sodium/calcium exchanger protein 298 437 IPR004837 GO:0016021|GO:0055085
Cme11g01002 457 Pfam Sodium/calcium exchanger protein 110 265 IPR004837 GO:0016021|GO:0055085
Cme11g01002 457 TIGRFAM caca2: calcium/proton exchanger 78 440 - -
Cme11g01002 457 TIGRFAM cax: calcium/proton exchanger 92 440 IPR004798 GO:0006816|GO:0015369
Cme11g01002 457 Gene3D - 283 441 IPR044880 -
Cme11g01002 457 Gene3D - 138 281 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01311 Cme-Chr4:18463183 Cme11g01002 Cme-Chr11:14304866 0 dispersed
Cme04g02718 Cme-Chr4:32580817 Cme11g01002 Cme-Chr11:14304866 2.08E-115 dispersed
Cme06g02728 Cme-Chr6:34485999 Cme11g01002 Cme-Chr11:14304866 7.81E-166 dispersed
Cme11g01002 Cme-Chr11:14304866 Cme12g00092 Cme-Chr12:924964 1.42E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01002 K07300 - csv:101215915 858.596