Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01002 ATGGATGGATTTAGGAGTAACGACAACAAACAAGGCGTTGAAAGGCATTCCCGCACCGAGATGGGGTCGTTAGGGGAGAAAACTATACTGGAATTTGAAGATGAGAGCCTTGTTAGTCCAGTATCATTAAATAGAAAGAACTTTTCGATTGAGGGATCTATCCATAGTTCTCCCTTGGGTGGTGGTTCGCAGAAACTTTGTTGCAGTAACATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTCGTTTTCTCGGCTAAAATAAACCTTCTCATGCCTTTTGGCCCTTTAGCAATAATAGTCAGCACCTTGTCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTTCTTGGATGTGCATTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGAGAGCAGGTTTTTAGTAAGGCAGCTGCTACAGTGAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCTACACACACAGAGTTGCACTCTGGAAAGTCAGAGCTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGTGATAAGAACTTATATCTCCCAGTCGATGAGGTGGATAATGAAGGGAGTTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCAATTGTTTGGCTGTCAATCTTGACCATATGGATCTCTGTCCTCTCCGAATACTTAGTTAATGCAATCGAGGGGGCATCGGTTGCAATGAACATACCTGTAGCATTCATCAGTGTTATTCTGCTACCTATTGTTGGGAATGCTGCTGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGATAAGCTTGACATTTCTTTGGGTGTTGCTATAGGATCATCGACACAGATATCTATGTTTGGGATTCCCTTTTGTGTGGTCATTGGTTGGATCATGGGATGTCCGATGGACTTGAATTTTCAACTTTTTGAAACCGCAACGCTTTTCATCACAGTCATTGTCGTGGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTAATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCATCAGTTGGAGACAAAACCCGAAAACCTGGTGTATGA 1374 41.99 MDGFRSNDNKQGVERHSRTEMGSLGEKTILEFEDESLVSPVSLNRKNFSIEGSIHSSPLGGGSQKLCCSNMKNRVFGSIKIVVFSAKINLLMPFGPLAIIVSTLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDNEGSSDDEEAPEISMWESIVWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGDKTRKPGV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14304866 14309727 + MELO3C013463.2.1 Cme11g01002 341665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01002 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 14 456 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cme11g01002 457 PANTHER VACUOLAR CATION/PROTON EXCHANGER 14 456 - -
Cme11g01002 457 Pfam Sodium/calcium exchanger protein 298 437 IPR004837 GO:0016021|GO:0055085
Cme11g01002 457 Pfam Sodium/calcium exchanger protein 110 265 IPR004837 GO:0016021|GO:0055085
Cme11g01002 457 TIGRFAM caca2: calcium/proton exchanger 78 440 - -
Cme11g01002 457 TIGRFAM cax: calcium/proton exchanger 92 440 IPR004798 GO:0006816|GO:0015369
Cme11g01002 457 Gene3D - 283 441 IPR044880 -
Cme11g01002 457 Gene3D - 138 281 IPR044880 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01002 K07300 chaA, CAX; Ca2+:H+ antiporter - csv:101215915 858.596
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01311 Cme-Chr4:18463183 Cme11g01002 Cme-Chr11:14304866 0 dispersed
Cme04g02718 Cme-Chr4:32580817 Cme11g01002 Cme-Chr11:14304866 2.08E-115 dispersed
Cme06g02728 Cme-Chr6:34485999 Cme11g01002 Cme-Chr11:14304866 7.81E-166 dispersed
Cme11g01002 Cme-Chr11:14304866 Cme12g00092 Cme-Chr12:924964 1.42E-102 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00272 . 1 409 Antiporters AT5G46110 79.5 4.1e-174 607.8
Cme10g00361 . 77 412 Antiporters AT5G46110 78.3 3.8e-148 521.5
Cme06g02272 CCT,ECH 1 395 Antiporters AT5G54800 73.2 4.5e-159 557.8
Cme04g00848 CCT,ECH 99 453 Antiporters AT5G54800 78.3 2.5e-157 552.0
Cme08g00388 . 39 429 Antiporters AT5G54800 70.7 3.6e-148 521.5
Cme09g00397 . 1 323 Antiporters AT3G01550 67.0 2.4e-120 429.1
Cme12g01691 . 88 452 Antiporters AT3G01550 58.2 5.8e-111 397.9
Cme12g01691 . 36 454 Antiporters AT5G33320 72.4 1.4e-155 546.2
Cme09g00397 . 2 326 Antiporters AT5G33320 62.9 3.3e-112 402.1
Cme06g02272 CCT,ECH 19 396 Antiporters AT1G61800 76.0 3.3e-160 561.6
Cme04g00848 CCT,ECH 80 454 Antiporters AT1G61800 75.0 4.3e-160 561.2
Cme08g00388 . 39 426 Antiporters AT1G61800 74.8 2.8e-159 558.5
Cme06g00288 . 140 442 Antiporters AT1G61800 52.8 1.1e-86 317.4
Cme06g00288 . 35 453 Antiporters AT5G17630 68.9 2.9e-151 531.9
Cme04g00848 CCT,ECH 139 452 Antiporters AT5G17630 53.9 3.7e-90 328.9
Cme06g02272 CCT,ECH 89 394 Antiporters AT5G17630 54.7 3.7e-90 328.9
Cme08g00388 . 130 427 Antiporters AT5G17630 54.5 1.8e-89 326.6
Cme11g01002 . 72 449 Antiporters AT3G13320 76.6 8.2e-157 550.4
Cme04g01311 . 57 426 Antiporters AT3G13320 76.0 9.1e-156 547.0
Cme06g02728 . 83 440 Antiporters AT3G13320 69.1 7.5e-126 447.6
Cme08g02585 CCT,ECH 44 468 Antiporters AT2G38170 71.8 2.2e-163 572.4
Cme04g02718 CCT,ECH 31 450 Antiporters AT2G38170 62.7 6.8e-141 497.7
Cme12g00092 . 35 401 Antiporters AT2G38170 61.1 8.1e-118 421.0
Cme06g02728 . 160 436 Antiporters AT2G38170 50.2 1.1e-63 241.1
Cme08g02585 CCT,ECH 40 436 Antiporters AT3G51860 72.7 9.3e-151 530.4
Cme04g02718 CCT,ECH 41 423 Antiporters AT3G51860 65.6 1.4e-133 473.4
Cme12g00092 . 40 377 Antiporters AT3G51860 67.0 8.0e-118 421.0
Cme11g01002 . 64 416 Antiporters AT3G51860 50.8 5.8e-84 308.5
Cme08g02585 CCT,ECH 73 473 Antiporters AT5G01490 61.7 9.7e-137 483.8
Cme04g02718 CCT,ECH 36 457 Antiporters AT5G01490 58.6 9.4e-132 467.2
Cme12g00092 . 29 403 Antiporters AT5G01490 55.6 1.7e-109 393.3
Cme11g01002 . 72 445 Antiporters AT1G55720 73.6 3.0e-146 515.4
Cme04g01311 . 57 423 Antiporters AT1G55720 71.2 1.1e-140 496.9
Cme06g02728 . 82 437 Antiporters AT1G55720 66.1 5.8e-118 421.4
Cme11g01002 . 73 445 Antiporters AT1G55730 77.9 1.5e-158 556.2
Cme04g01311 . 57 427 Antiporters AT1G55730 76.1 4.8e-157 551.2
Cme06g02728 . 82 440 Antiporters AT1G55730 70.1 2.8e-128 455.7
Cme08g02585 CCT,ECH 104 469 Antiporters AT1G55730 51.1 5.6e-97 351.7
Cme11g01975 . 22 527 Antiporters AT5G27150 75.0 2.0e-218 755.4
Cme02g00152 . 4 537 Antiporters AT5G27150 72.2 1.5e-213 739.2
Cme01g00977 . 1 410 Antiporters AT5G27150 58.0 1.4e-126 450.3
Cme01g02168 . 1 279 Antiporters AT5G27150 67.0 3.4e-104 375.9
Cme11g01975 . 22 536 Antiporters AT3G06370 71.3 3.0e-209 724.9
Cme02g00152 . 5 521 Antiporters AT3G06370 67.6 1.0e-188 656.8
Cme01g00977 . 1 410 Antiporters AT3G06370 57.4 1.2e-120 430.6
Cme01g02168 . 1 281 Antiporters AT3G06370 60.9 2.4e-89 326.6
Cme11g01975 . 18 514 Antiporters AT5G55470 58.6 8.0e-167 583.9
Cme01g00977 . 1 416 Antiporters AT5G55470 71.8 4.0e-166 581.6
Cme02g00152 . 18 534 Antiporters AT5G55470 58.0 3.5e-162 568.5
Cme01g02168 . 1 265 Antiporters AT5G55470 52.2 6.1e-66 248.8
Cme11g01975 . 22 527 Antiporters AT3G05030 75.4 3.7e-223 771.2
Cme02g00152 . 10 521 Antiporters AT3G05030 75.6 2.5e-216 748.4
Cme01g00977 . 1 410 Antiporters AT3G05030 56.6 1.1e-123 440.7
Cme01g02168 . 1 282 Antiporters AT3G05030 66.4 6.9e-105 378.3
Cme04g01067 . 102 665 Antiporters AT1G15460 70.1 1.8e-228 788.9
Cme03g01647 . 99 643 Antiporters AT1G15460 65.6 4.0e-212 734.6
Cme04g01046 . 102 645 Antiporters AT1G15460 59.2 4.8e-181 631.3
Cme12g01692 . 102 644 Antiporters AT1G15460 57.2 2.1e-176 615.9
Cme04g01046 . 3 709 Antiporters AT3G06450 69.9 3.1e-294 1007.7
Cme12g01692 . 3 683 Antiporters AT3G06450 67.9 6.1e-274 940.3
Cme03g01647 . 3 638 Antiporters AT3G06450 56.5 1.3e-215 746.5
Cme04g01067 . 6 647 Antiporters AT3G06450 55.8 3.0e-212 735.3
Cme04g01046 . 1 716 Antiporters AT2G47160 79.4 0.0e+00 1161.7
Cme12g01692 . 1 670 Antiporters AT2G47160 73.4 2.7e-298 1021.1
Cme03g01647 . 4 638 Antiporters AT2G47160 57.4 3.4e-216 748.4
Cme04g01067 . 1 647 Antiporters AT2G47160 56.2 5.4e-214 741.1
Cme04g01067 . 5 663 Antiporters AT1G74810 69.7 6.3e-273 936.8
Cme03g01647 . 4 646 Antiporters AT1G74810 66.5 5.5e-253 870.5
Cme04g01046 . 7 645 Antiporters AT1G74810 59.8 1.2e-218 756.5
Cme12g01692 . 7 644 Antiporters AT1G74810 56.7 2.2e-209 725.7
Cme04g01046 . 1 708 Antiporters AT3G62270 81.8 0.0e+00 1164.8
Cme12g01692 . 1 706 Antiporters AT3G62270 73.6 5.6e-301 1030.0
Cme03g01647 . 4 638 Antiporters AT3G62270 59.4 1.4e-222 769.6
Cme04g01067 . 1 647 Antiporters AT3G62270 57.7 1.5e-216 749.6
Cme03g01647 . 4 647 Antiporters AT4G32510 67.0 8.2e-257 883.2
Cme04g01067 . 1 668 Antiporters AT4G32510 64.2 2.5e-253 871.7
Cme04g01046 . 1 645 Antiporters AT4G32510 55.4 1.1e-208 723.4
Cme12g01692 . 1 650 Antiporters AT4G32510 53.1 2.4e-200 695.7
Cme03g01647 . 4 645 Antiporters AT5G25430 70.1 1.9e-261 898.7
Cme04g01067 . 7 664 Antiporters AT5G25430 65.4 1.9e-245 845.5
Cme04g01046 . 7 645 Antiporters AT5G25430 56.2 3.5e-207 718.4
Cme12g01692 . 7 656 Antiporters AT5G25430 53.6 2.7e-196 682.2
Cme09g01275 . 12 1139 Antiporters AT2G01980 65.3 0.0e+00 1370.9
Cme09g01275 . 11 738 Antiporters AT1G14660 65.2 6.3e-271 930.2
Cme02g00228 . 60 628 Antiporters AT5G11800 75.4 1.2e-224 776.2
Cme06g00928 . 57 533 Antiporters AT5G11800 70.9 1.6e-176 616.3
Cme03g02155 . 49 341 Antiporters AT5G11800 85.1 5.4e-127 451.8
Cme06g00928 . 31 544 Antiporters AT5G51710 77.8 6.7e-228 786.9
Cme02g00228 . 92 601 Antiporters AT5G51710 68.6 1.5e-182 636.3
Cme03g02155 . 47 338 Antiporters AT5G51710 69.2 1.5e-102 370.5
Cme02g00228 . 80 625 Antiporters AT2G19600 80.9 2.0e-230 795.4
Cme06g00928 . 35 533 Antiporters AT2G19600 68.1 1.7e-170 596.3
Cme03g02155 . 18 338 Antiporters AT2G19600 76.5 1.2e-123 440.7
Cme06g01370 . 143 720 Antiporters AT1G49810 52.9 4.9e-143 504.6
Cme06g01370 . 1 735 Antiporters AT3G19490 58.6 8.1e-213 736.9
Cme05g00158 . 102 588 Antiporters AT5G12860 87.9 7.0e-246 846.7
Cme07g01267 . 83 577 Antiporters AT5G64280 67.7 3.8e-196 681.4
Cme07g01267 . 1 577 Antiporters AT5G64290 70.9 5.3e-217 750.7
Cme01g00300 . 3 377 Antiporters AT4G28390 81.0 5.9e-172 600.5
Cme03g02060 . 35 421 Antiporters AT4G28390 74.1 1.9e-157 552.4
Cme12g01918 . 2 308 Antiporters AT4G28390 62.5 4.2e-109 391.7
Cme03g02058 . 62 247 Antiporters AT4G28390 87.6 3.7e-89 325.5
Cme03g02060 . 33 422 Antiporters AT3G08580 78.4 2.8e-169 591.7
Cme01g00300 . 62 376 Antiporters AT3G08580 83.9 1.6e-148 522.7
Cme12g01918 . 8 308 Antiporters AT3G08580 58.0 1.3e-97 353.6
Cme03g02058 . 62 248 Antiporters AT3G08580 82.4 1.5e-82 303.5
Cme03g02060 . 33 422 Antiporters AT5G13490 82.2 3.5e-180 627.9
Cme01g00300 . 8 376 Antiporters AT5G13490 79.5 3.7e-161 564.7
Cme12g01918 . 9 308 Antiporters AT5G13490 60.9 8.3e-105 377.5
Cme03g02058 . 62 248 Antiporters AT5G13490 91.5 3.9e-94 342.0
Cme12g01918 . 6 302 Antiporters AT5G17400 79.5 3.3e-136 481.5
Cme01g00300 . 77 363 Antiporters AT5G17400 64.5 1.2e-109 393.3
Cme03g02060 . 122 413 Antiporters AT5G17400 63.0 3.7e-108 388.3
Cme03g02058 . 62 239 Antiporters AT5G17400 59.0 2.2e-60 229.6
Cme02g00107 . 42 609 Antiporters AT1G08960 64.1 9.4e-187 650.2
Cme04g02070 . 16 524 Antiporters AT5G17850 50.2 3.8e-135 478.8
Cme07g02135 . 1 537 Antiporters AT2G47600 71.3 3.6e-215 744.6
Cme04g01097 CCT 1 300 Antiporters AT1G79900 68.1 1.2e-116 416.4
Cme01g02686 CCT 1 302 Antiporters AT1G79900 67.3 1.8e-115 412.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000498 3 6 4 4 3 3 3 3 3 3 3 3 3 3 3 4 3 3 4 3 2 3 3 3 2 3 3 9 16 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01002 Cme_Chr11 FPKM 8.140244 9.476634 9.144859 9.678675 17.604311 18.285553 16.195587 8.576682 9.832323 11.45932