Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01009 ATGGCTTCCACGACCAAGGATGTTGCTGCCGATGGGAAGACAGCTTCGTCAGAGACCCAAAGCGCGAAAAGTGAAACATCCAAGAATGAAACATCTAAAAGTGAAACATCCTCTGCAGAGCAGCAGCCAGATAAACCAAAACCTACCTCTGCTGCACCTCATGAGGGAGAATTTCCCCCAAATCCTTTTGATTTCTCAGCAATGACCGGTTTGCTTAATGATCCCAGCATTCAAGAATTAGCTTCTCAAATAGCAAAAGATCCTGCATTTAATCAGATGGCATCGCAACTTCAGAAGACTTTTCAAGGTGCTTCTGCACAGCAGGGTATTCCTCAGTTTGATACACAACAATATTACTCTACCATGCAGCAGGTCATGCAGAATCCCCAATTCATGACAATGGCCGAGCGCCTTGGCAATGCTTTAATGCAGGATCCATCCATGTCTAGCATGTTGGAAACTTTTGCAAATCCATCAAATAAAGAGCAGCTTGAGGAACGTATGGCACAAATCAAGGAAGATCCTAGTTTGAAGCCAATTTTAGATGAAATAGAGACTGGTGGTCCAGCTGCCATGATGAGGTATTGGAATGACAGAGATGTCTTGAAAAAATTAGGGGAAGCAATGGGTTTTGCAGTTTATGGAGACGCTGCCAATGCCGAAAGTTCTGCTGCAGATGATTCAGAAGAAGTGGGGAACGATGATGAATCTGTAGTTCATCAAACTGCCAGTGTTGGTGATGCTGAGGGCTTAAAAAATGCACTAGCAGCTGGTGCGAACAAGGATGAAGAAGATTCGGAGGGAAGGACTGCATTGCATTTTGCATGCGGGTATGGTGAGGCTAAGTGCGCTCAGATCCTTCTTGAAGCTGGAGTGAAGGTGGATGCACTGGATAAGAATAAGAATACTGCACTTCATTATGCAGCTGGTTATGGCAGAAAGGAGTGTGTTGCACTATTGCTTGAGAATGGCGCCGCAGTGTAA 984 44.92 MASTTKDVAADGKTASSETQSAKSETSKNETSKSETSSAEQQPDKPKPTSAAPHEGEFPPNPFDFSAMTGLLNDPSIQELASQIAKDPAFNQMASQLQKTFQGASAQQGIPQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLETFANPSNKEQLEERMAQIKEDPSLKPILDEIETGGPAAMMRYWNDRDVLKKLGEAMGFAVYGDAANAESSAADDSEEVGNDDESVVHQTASVGDAEGLKNALAAGANKDEEDSEGRTALHFACGYGEAKCAQILLEAGVKVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14508800 14514142 + MELO3C013470.2.1 Cme11g01009 341672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01009 327 SUPERFAMILY Ankyrin repeat 227 325 IPR036770 -
Cme11g01009 327 Gene3D - 212 327 IPR036770 -
Cme11g01009 327 MobiDBLite consensus disorder prediction 1 70 - -
Cme11g01009 327 ProSiteProfiles Ankyrin repeat profile. 267 299 IPR002110 GO:0005515
Cme11g01009 327 ProSiteProfiles Ankyrin repeat region circular profile. 300 327 - -
Cme11g01009 327 ProSiteProfiles Ankyrin repeat region circular profile. 267 299 - -
Cme11g01009 327 Pfam STI1 domain 167 210 IPR041243 -
Cme11g01009 327 MobiDBLite consensus disorder prediction 1 45 - -
Cme11g01009 327 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 40 327 - -
Cme11g01009 327 SMART ANK_2a 267 296 IPR002110 GO:0005515
Cme11g01009 327 SMART ANK_2a 234 263 IPR002110 GO:0005515
Cme11g01009 327 SMART ANK_2a 300 327 IPR002110 GO:0005515
Cme11g01009 327 Pfam Ankyrin repeats (3 copies) 240 325 IPR002110 GO:0005515
Cme11g01009 327 PANTHER - 40 327 - -
Cme11g01009 327 ProSiteProfiles Ankyrin repeat profile. 300 327 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01009 - - - csv:101215197 604.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00580 Cme-Chr1:4439268 Cme11g01009 Cme-Chr11:14508800 8.56E-149 dispersed
Cme05g00571 Cme-Chr5:5785991 Cme11g01009 Cme-Chr11:14508800 6.37E-09 dispersed
Cme11g01009 Cme-Chr11:14508800 Cme01g02150 Cme-Chr1:30387342 8.74E-06 dispersed
Cme11g01009 Cme-Chr11:14508800 Cme08g00191 Cme-Chr8:1316654 8.87E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01009 Cme_Chr11 FPKM 1.995929 3.275129 13.43154 13.7575 33.295448 31.127842 32.383198 5.194026 4.977165 5.85699