Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01011 ATGGAGGCAGGGGGGAATTCATTACCATCTGGGCCTGACGGTGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAGGGTCACCCAATGAAGCCGCATCGCATCAGAATGACACATGCCCTTCTTGCCCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCCAGAGACAAAGTCCTTTGCAGATTTCATGCTGATGATTATGTGGCGTTTCTTAAAAGCATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTTTGTCAAACTTATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCACAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACATCATGCGAAGAAATGCGAAGCTTCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAACTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAATTTGGAGATTACTTTCCTGGTACAGGAGATATAAGAGACATCGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGACGGAATTGATGATGAAAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGTGCTGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACCATCCGTAACGTTGCTCGCTGCTGGTGCTACGAGACAGGAGTTGCACTAGGGATGGAGGTTGATGATAAAATGCCACAACATGAATATTATGAGTATTTTGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTGGAAGAAATACAAGGAAAGCTGCTTGAATACCTTTCTAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAAGAAGATCAAGAGGATAGGGATGAGAGATGGGATCCAGACTCGGATATGGAAGTTGATGAAGAGAGAAAACCCATCCAGGGCAGAGTTAAAAAAGAGACAGTTGAATCTGAAATCAAAGATCCGGAAGTGAATCTGGAGAGTGCCAGAGGTTCAGAAAAAACAGCAGCTGAGTCTACAAGCGCAAAGGCTTTAGATATAGGCTCTCTCAAAATCGAAGAGTCAGGTGTAAAACTCGAAGAGACCAGCAAGCAGAATGACCAAATCTTCCCCTAG 1479 43.88 MEAGGNSLPSGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPLPARDKVLCRFHADDYVAFLKSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHKVCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKHYERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIMGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNTHQMLEEIQGKLLEYLSRLQHAPSVQFQERPPDTELPEAEEDQEDRDERWDPDSDMEVDEERKPIQGRVKKETVESEIKDPEVNLESARGSEKTAAESTSAKALDIGSLKIEESGVKLEETSKQNDQIFP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14525329 14530176 - MELO3C013472.2.1 Cme11g01011 341674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01011 492 MobiDBLite consensus disorder prediction 418 449 - -
Cme11g01011 492 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Cme11g01011 492 MobiDBLite consensus disorder prediction 397 417 - -
Cme11g01011 492 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Cme11g01011 492 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Cme11g01011 492 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Cme11g01011 492 Pfam Histone deacetylase domain 36 324 IPR023801 -
Cme11g01011 492 MobiDBLite consensus disorder prediction 385 492 - -
Cme11g01011 492 PANTHER HISTONE DEACETYLASE 19 3 488 - -
Cme11g01011 492 PIRSF HDAC_I_euk 6 464 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Cme11g01011 492 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Cme11g01011 492 PANTHER HISTONE DEACETYLASE 3 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01011 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101214717 1004.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00073 Cme11g01011 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00581 Cme-Chr1:4446348 Cme11g01011 Cme-Chr11:14525329 0 dispersed
Cme02g02005 Cme-Chr2:26275912 Cme11g01011 Cme-Chr11:14525329 0 dispersed
Cme11g01011 Cme-Chr11:14525329 Cme11g01895 Cme-Chr11:27096606 4.88E-163 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99