Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01016 ATGGAGCAGGAGCTTGAAACCAATGGCAAAGGCAAAGTCTGCGTTACTGGAGCTTCTGGGTTTTTTGCTTCTTGGCTTGTTAAGCGATTGCTTATGTCTGGCTATCATGTGATTGGTACTGTTAGGGATCCAGGGAATGTGAAGAAGGTAGAGCATCTATGGAGATTGGAAGGAGCAAAGGAGAGGCTTCGACTCGTCAAGGCTGATTTGATGGAACCTGGGAGCTTTGATGATGCTGTGATAGGATGTCATGGCGTGTTCCACACTGCTTCCCCTGTCTTAGATGCTACTCATTCCAAGGCAGAAACGCTGGAACCAGCCATTGAGGGAACATTGAATGTATTACATTCATGCAAGAAGAACCCATCTCTGAGACGTGTGGTGCTCACTTCATCTTCCTCAACTGTTCGAGTAAGAGAAGATTTTGACCCCAAAATACCATTGGATGAGTCATCTTGGACCTCTGTTCAACTGTGCGAGAGACTTAAGCTGTGGTATGCTCTTGCAAAAACTCTAGCAGAAAAGGCAGCGTGGGAATTCTGCAACGAAAATGGAATCGATTTAGTAACTGTGCTCCCTTCAGTGATCATCGGGCCTAATTTGTCGCGGGATTTATGTTATACAGCATCCATTGTCCTTGGCCTTCTTAAAGGGGAGACTGAGCCTTTCCAATCACTTGGAAGGGTAGGATATATTCACATTGATGATGTTGCCCTCTCACACATCCTTGCTTTTGAGAACAAAGATGCTCAAGGCAGATACATTTGCTCCTCAATTGTGCTGGAAATCAATGACTTGGCATCACGCTTATCGTCTCGCTATCCGTTGTTCCCTATTTCAAAAAAGTTTGAGGCATCAAACAGACCATATTATGATTACAACATGTCAAAGATTGAGAAATTGGGAATGAAGTTCAAGTGTGTAGAAGAGATGTTTGATGACTGCATTGCTTCTCTCTTAGAGCAAGGCCATCTTTCTTCACCTTAA 987 43.97 MEQELETNGKGKVCVTGASGFFASWLVKRLLMSGYHVIGTVRDPGNVKKVEHLWRLEGAKERLRLVKADLMEPGSFDDAVIGCHGVFHTASPVLDATHSKAETLEPAIEGTLNVLHSCKKNPSLRRVVLTSSSSTVRVREDFDPKIPLDESSWTSVQLCERLKLWYALAKTLAEKAAWEFCNENGIDLVTVLPSVIIGPNLSRDLCYTASIVLGLLKGETEPFQSLGRVGYIHIDDVALSHILAFENKDAQGRYICSSIVLEINDLASRLSSRYPLFPISKKFEASNRPYYDYNMSKIEKLGMKFKCVEEMFDDCIASLLEQGHLSSP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14563385 14567958 + MELO3C013473.2.1 Cme11g01016 341679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01016 328 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 325 - -
Cme11g01016 328 Gene3D - 8 328 - -
Cme11g01016 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 319 IPR036291 -
Cme11g01016 328 CDD FR_SDR_e 13 302 - -
Cme11g01016 328 Pfam NAD dependent epimerase/dehydratase family 13 250 IPR001509 -
Cme11g01016 328 PANTHER OS08G0515900 PROTEIN 8 325 IPR033267 GO:0009555|GO:0080110
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01016 - - - csv:101215440 627.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00111 Cme-Chr6:704620 Cme11g01016 Cme-Chr11:14563385 9.53E-36 dispersed
Cme10g00263 Cme-Chr10:1720811 Cme11g01016 Cme-Chr11:14563385 5.47E-94 dispersed
Cme11g01016 Cme-Chr11:14563385 Cme12g00035 Cme-Chr12:396265 9.58E-73 dispersed
Cme11g02510 Cme-Chr11:31634957 Cme11g01016 Cme-Chr11:14563385 6.04E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g327 . . . . Bpe07g00689 . . Bma12g00893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005971 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 3 4 1 2 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01016 Cme_Chr11 FPKM 58.604954 67.748062 14.61821 16.364723 1.740678 0.860923 1.320928 1.512803 1.563364 1.043882