Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01018 | ATGGAGGACAAGCAAGGTATGAGCAGTACCAAGCCTACCGACAAATGGATGGCAATTGACAGAGAATCAAACACAACAAACACTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTTGCAATCTTCTTCCATAGTATCAACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGCAGTTTCAAGGCCATCGTGGGGAGAGCATCTGGGGAAGGAGGGGGCAGCAAAAGATCATCTGAGAAAATCAGTGGTTCAGGAAGAACTTCAAGCTTTAGCAATGAAACCTCGGGAGTTTTTCCAAGGGTGTCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTGGTCTCTGATGCCACAAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGTTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATCGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACAGACCAGAAAGAAGTCGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTATTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGTATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCGTTACGACCGAACGGGTTGCCAAAGTCATTAATCCGTTATGATGCTCGCCAGAAGGAAAAGGCAATAGTTTCCATCACAGAGGTTGTTCAGACAGTGAAGAATCCTCGATCTCGAGCTATCAGTCATGACACTACTAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCATCCAAAATCAGTTGAAGCTGCAACTAATACACCGGGTAGACAAACTCCTCTACAAGACCTCAAAGATGATGGGTTAGGAAAAAAACCTAGGCTATCAAGTCGAGTTTCTTTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTGCAAGGAAGCTTGAAGTAACAGATTTTGAACCAGAAATTTTGATGACCGATGAAATGGAACGGACTGATAGTTGGGATCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGAATTGAGAAAAATTTTGTTATTACTGATCCAAGGCTTCCTGATAATCCAATTATCTTTGCATCAGACAGCTTTCTTGAATTGACGGAATATACACGTGAAGAAATTTTGGGACGAAACTGTAGGTTCCTTCAAGGACCTGAAACAGACCAAGAAACTGTCTCAAAGATAAGGGATGCCATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACTAAGACTGGTAAAAAGTTCTGGAACTTGTTTCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATTGGTGTTCAACTAGATGGAAGTGGCCACGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGATGCAAAGTGCCAAGCTGGTTAAAGCCACTGCGGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAGAAGATTATACGACGTGGTGAAAAAATTGGACTCCAACATTTTAAACCAATTAAACCACTGGGGTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTCTTGAATAGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTGTACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCGGCAGAGGTTGTCGTTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAAGATGGCCATGTTACGCTTGCTGACTTTGATTTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCCTCAAGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACACAATCTAATTCTTTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTACAGAGAGACCCTGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATTAACTGGCCACTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCAACTTACTGGAAAAGATGGAACAACCAAGTCTGTAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATGTGGATTTTTTCTGA | 2760 | 43.04 | MEDKQGMSSTKPTDKWMAIDRESNTTNTPGNESKEDRKSLQSSSIVSTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAIVSITEVVQTVKNPRSRAISHDTTRKKEDLEKFNLDYVHPKSVEAATNTPGRQTPLQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSARKLEVTDFEPEILMTDEMERTDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAEMQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVVGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLPQGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLQLTGKDGTTKSVNWEDDGVLSSMDVDFF | 919 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 14646603 | 14661142 | + | MELO3C013476.2.1 | Cme11g01018 | 341681 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01018 | 919 | SMART | serkin_6 | 584 | 871 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01018 | 919 | PANTHER | FLIPPASE KINASE 1-RELATED | 85 | 917 | - | - | |
Cme11g01018 | 919 | MobiDBLite | consensus disorder prediction | 302 | 328 | - | - | |
Cme11g01018 | 919 | Gene3D | Phosphorylase Kinase; domain 1 | 583 | 667 | - | - | |
Cme11g01018 | 919 | SUPERFAMILY | Protein kinase-like (PK-like) | 560 | 897 | IPR011009 | - | |
Cme11g01018 | 919 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 134 | 226 | IPR035965 | - | |
Cme11g01018 | 919 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 399 | 498 | IPR035965 | - | |
Cme11g01018 | 919 | SMART | pac_2 | 460 | 502 | IPR001610 | - | |
Cme11g01018 | 919 | SMART | pac_2 | 190 | 232 | IPR001610 | - | |
Cme11g01018 | 919 | CDD | PAS | 398 | 498 | IPR000014 | - | |
Cme11g01018 | 919 | MobiDBLite | consensus disorder prediction | 77 | 109 | - | - | |
Cme11g01018 | 919 | ProSitePatterns | Protein kinases ATP-binding region signature. | 590 | 613 | IPR017441 | GO:0005524 | |
Cme11g01018 | 919 | Gene3D | PAS domain | 372 | 536 | - | - | |
Cme11g01018 | 919 | ProSiteProfiles | PAS repeat profile. | 113 | 186 | IPR000014 | - | |
Cme11g01018 | 919 | MobiDBLite | consensus disorder prediction | 87 | 109 | - | - | |
Cme11g01018 | 919 | Gene3D | PAS domain | 127 | 297 | - | - | |
Cme11g01018 | 919 | Gene3D | Transferase(Phosphotransferase) domain 1 | 668 | 888 | - | - | |
Cme11g01018 | 919 | TIGRFAM | sensory_box: PAS domain S-box protein | 408 | 498 | IPR000014 | - | |
Cme11g01018 | 919 | TIGRFAM | sensory_box: PAS domain S-box protein | 140 | 230 | IPR000014 | - | |
Cme11g01018 | 919 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cme11g01018 | 919 | ProSiteProfiles | PAS repeat profile. | 383 | 456 | IPR000014 | - | |
Cme11g01018 | 919 | CDD | PAS | 140 | 229 | IPR000014 | - | |
Cme11g01018 | 919 | Pfam | PAS domain | 406 | 498 | IPR000014 | - | |
Cme11g01018 | 919 | Pfam | PAS domain | 134 | 230 | IPR000014 | - | |
Cme11g01018 | 919 | ProSiteProfiles | PAC domain profile. | 457 | 511 | IPR000700 | - | |
Cme11g01018 | 919 | SMART | pas_2 | 115 | 184 | IPR000014 | - | |
Cme11g01018 | 919 | SMART | pas_2 | 385 | 454 | IPR000014 | - | |
Cme11g01018 | 919 | PANTHER | BNAA02G07840D PROTEIN | 85 | 917 | - | - | |
Cme11g01018 | 919 | ProSiteProfiles | PAC domain profile. | 187 | 241 | IPR000700 | - | |
Cme11g01018 | 919 | Pfam | Protein kinase domain | 586 | 871 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01018 | 919 | ProSiteProfiles | Protein kinase domain profile. | 584 | 871 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01018 | 919 | CDD | STKc_phototropin_like | 582 | 890 | - | - | |
Cme11g01018 | 919 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 705 | 717 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00585 | Cme-Chr1:4536223 | Cme11g01018 | Cme-Chr11:14646603 | 0 | dispersed | |
Cme11g01018 | Cme-Chr11:14646603 | Cme11g01748 | Cme-Chr11:25620429 | 0 | dispersed | |
Cme11g01018 | Cme-Chr11:14646603 | Cme08g01220 | Cme-Chr8:8594012 | 2.77E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65240 | PF00069 | Pkinase | 8.60E-62 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01018 | K20715 | - | csv:101215355 | 1761.89 |