Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01018 ATGGAGGACAAGCAAGGTATGAGCAGTACCAAGCCTACCGACAAATGGATGGCAATTGACAGAGAATCAAACACAACAAACACTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTTGCAATCTTCTTCCATAGTATCAACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGCAGTTTCAAGGCCATCGTGGGGAGAGCATCTGGGGAAGGAGGGGGCAGCAAAAGATCATCTGAGAAAATCAGTGGTTCAGGAAGAACTTCAAGCTTTAGCAATGAAACCTCGGGAGTTTTTCCAAGGGTGTCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTGGTCTCTGATGCCACAAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGTTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATCGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACAGACCAGAAAGAAGTCGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTATTGCGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGTATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCGTTACGACCGAACGGGTTGCCAAAGTCATTAATCCGTTATGATGCTCGCCAGAAGGAAAAGGCAATAGTTTCCATCACAGAGGTTGTTCAGACAGTGAAGAATCCTCGATCTCGAGCTATCAGTCATGACACTACTAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCATCCAAAATCAGTTGAAGCTGCAACTAATACACCGGGTAGACAAACTCCTCTACAAGACCTCAAAGATGATGGGTTAGGAAAAAAACCTAGGCTATCAAGTCGAGTTTCTTTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTGCAAGGAAGCTTGAAGTAACAGATTTTGAACCAGAAATTTTGATGACCGATGAAATGGAACGGACTGATAGTTGGGATCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGAATTGAGAAAAATTTTGTTATTACTGATCCAAGGCTTCCTGATAATCCAATTATCTTTGCATCAGACAGCTTTCTTGAATTGACGGAATATACACGTGAAGAAATTTTGGGACGAAACTGTAGGTTCCTTCAAGGACCTGAAACAGACCAAGAAACTGTCTCAAAGATAAGGGATGCCATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACTAAGACTGGTAAAAAGTTCTGGAACTTGTTTCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATTGGTGTTCAACTAGATGGAAGTGGCCACGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGATGCAAAGTGCCAAGCTGGTTAAAGCCACTGCGGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAGAAGATTATACGACGTGGTGAAAAAATTGGACTCCAACATTTTAAACCAATTAAACCACTGGGGTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTCTTGAATAGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTGTACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCGGCAGAGGTTGTCGTTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAAGATGGCCATGTTACGCTTGCTGACTTTGATTTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCCTCAAGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACACAATCTAATTCTTTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTACAGAGAGACCCTGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATTAACTGGCCACTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCAACTTACTGGAAAAGATGGAACAACCAAGTCTGTAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATGTGGATTTTTTCTGA 2760 43.04 MEDKQGMSSTKPTDKWMAIDRESNTTNTPGNESKEDRKSLQSSSIVSTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAIVSITEVVQTVKNPRSRAISHDTTRKKEDLEKFNLDYVHPKSVEAATNTPGRQTPLQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSARKLEVTDFEPEILMTDEMERTDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAEMQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVVGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLPQGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLQLTGKDGTTKSVNWEDDGVLSSMDVDFF 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14646603 14661142 + MELO3C013476.2.1 Cme11g01018 341681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01018 919 SMART serkin_6 584 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01018 919 PANTHER FLIPPASE KINASE 1-RELATED 85 917 - -
Cme11g01018 919 MobiDBLite consensus disorder prediction 302 328 - -
Cme11g01018 919 Gene3D Phosphorylase Kinase; domain 1 583 667 - -
Cme11g01018 919 SUPERFAMILY Protein kinase-like (PK-like) 560 897 IPR011009 -
Cme11g01018 919 SUPERFAMILY PYP-like sensor domain (PAS domain) 134 226 IPR035965 -
Cme11g01018 919 SUPERFAMILY PYP-like sensor domain (PAS domain) 399 498 IPR035965 -
Cme11g01018 919 SMART pac_2 460 502 IPR001610 -
Cme11g01018 919 SMART pac_2 190 232 IPR001610 -
Cme11g01018 919 CDD PAS 398 498 IPR000014 -
Cme11g01018 919 MobiDBLite consensus disorder prediction 77 109 - -
Cme11g01018 919 ProSitePatterns Protein kinases ATP-binding region signature. 590 613 IPR017441 GO:0005524
Cme11g01018 919 Gene3D PAS domain 372 536 - -
Cme11g01018 919 ProSiteProfiles PAS repeat profile. 113 186 IPR000014 -
Cme11g01018 919 MobiDBLite consensus disorder prediction 87 109 - -
Cme11g01018 919 Gene3D PAS domain 127 297 - -
Cme11g01018 919 Gene3D Transferase(Phosphotransferase) domain 1 668 888 - -
Cme11g01018 919 TIGRFAM sensory_box: PAS domain S-box protein 408 498 IPR000014 -
Cme11g01018 919 TIGRFAM sensory_box: PAS domain S-box protein 140 230 IPR000014 -
Cme11g01018 919 MobiDBLite consensus disorder prediction 1 46 - -
Cme11g01018 919 ProSiteProfiles PAS repeat profile. 383 456 IPR000014 -
Cme11g01018 919 CDD PAS 140 229 IPR000014 -
Cme11g01018 919 Pfam PAS domain 406 498 IPR000014 -
Cme11g01018 919 Pfam PAS domain 134 230 IPR000014 -
Cme11g01018 919 ProSiteProfiles PAC domain profile. 457 511 IPR000700 -
Cme11g01018 919 SMART pas_2 115 184 IPR000014 -
Cme11g01018 919 SMART pas_2 385 454 IPR000014 -
Cme11g01018 919 PANTHER BNAA02G07840D PROTEIN 85 917 - -
Cme11g01018 919 ProSiteProfiles PAC domain profile. 187 241 IPR000700 -
Cme11g01018 919 Pfam Protein kinase domain 586 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01018 919 ProSiteProfiles Protein kinase domain profile. 584 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01018 919 CDD STKc_phototropin_like 582 890 - -
Cme11g01018 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00585 Cme-Chr1:4536223 Cme11g01018 Cme-Chr11:14646603 0 dispersed
Cme11g01018 Cme-Chr11:14646603 Cme11g01748 Cme-Chr11:25620429 0 dispersed
Cme11g01018 Cme-Chr11:14646603 Cme08g01220 Cme-Chr8:8594012 2.77E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65240 PF00069 Pkinase 8.60E-62 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01018 K20715 - csv:101215355 1761.89