Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01021 ATGGAAATGGTAAAGATCGGAACCCTAGAACGATCGGCAAAGAGATCAGACAACCGTTACCGCCACTGGTACTTTAGTGATCGTGCACCTACTTTTATTCTTACCAATTATGGATTAGAATTCTTCTTCCTTCTTCCCATTTGCCCCCAATTTGTTTCACTTTCTTCTCCGGCCTCAATAGCTTCTAATAGGGAAAGTTTACAACTCTCAGTTCATCGTACAAATCCGGTGATATATATCTTGAAGGATCGTAAGGGAGATGGAAGTCCTTTAGGAAGCATCTCCCGACTCTTGTTTAGTAGTTCTTTAGAAATGAGTGGTGGCCGGCAGCGGACCCTTGTGGTTGGGATTCAGCATGTTTTGGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTATTATGCAGTCCAGGGCGATGGTGATCATCACTCTGGGGCGAATATCTTTTGGGCTGATGCAACGTGTAGAATGAATTATACTTACTTTGGGGACACTGTTGTACTAGATACAACATTTAGAACAAATCAGTATAGGGTGCCTCTTGCTGCCTTTTCAGGGTTTAATCATCATGGTCAGCCAGTGTTGTTTGGATGTGCGTTGGTTCTTTATGAGTCTGAATCCTCATTCATTTGGCTCTTCCAAACTTGGCTTCAAGCAATGTCTGGCCGCCAACCAATTTCCATTACAACGGACCCAGATAGGCTTATCCAGGTTGCCGTTGCACAAGTTCTTCCAGGTACTCGCCATCGTTTTTGCAAATGGGCTATATTCAGAGAAACTCAGGAGAAGTTGTCTCATCTTTGCCAATCTCATCCTACCTTTGAAACCGAGTTTAGAAAATGTGTTAATGAGGCTGAGACAATTGAAGAATTTGAGTCCTGCTGGGAAGCCCTTCTGAATAGATATTACATTATGGACAATGAGTGGCTTCAGTTAATGTATGGTGCTAGACAACAGTGGGTACCTGTCTACATGAGGGACACTTTCTTTGGAGAAATGTCAATAAATGAGAGCTATAAAAGTTTGAATTTGTTTTTTGATGGATATGTTACTGCATCCACCTCTATGCAGATGTTGGTTAGACAGTATGAAAAGGCCATGGCAAGCTGGCATGAAAAAGAATTAAAAGCTGATTACGATACAATTGACTCTATGCCTGTCCTGAAGACACCATCTCCTATGGAGAAACAGGCTGCAGATCTATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGACACAGGAACAGTTGCTACTTATCGAGTAGCAAAATTTGGGGAAGACCATAAAGCCCATGCTGTTAGTTTTAATTCATTAGAGATGAAAGCCAATTGCAGTTGTCAGCTGTTTGAATATTTGGGAATAATTTGCAGGCATATATTAGCGGTTTTTAGGGCAAAAAATGTTCTTACACTTCCTTCTCAATATGTATTGAAACGGTGGACCAGAAATGCCAGAAATGGAGCTGTAATAGATGATCATGATTCAGAACTACCAAATGAAGCTGGAGATTCTTCTACTGTTAGGTACAATAATCTTCGTCAAGGAGCAATCAAGTATGTTGAAGAAGGAGCGAAGTCAATTCATATTTATAATGTGGCTATGGAGGCCCTAAAAGAGGCCTCTAGAAAGGTTGCTGCTGTGAAGAATCGGGGCCCTGGAGCTACTAACGGTGATATTATGGCCAATGGAGTTGTTGGGGTTTTGGTTGCAACAGAAGAAAATCAGACGGCAACCTATCAATCAGTGGAACAAAAGGAGAAAAAAATTCGTGAGCTTTCTGCAGAGTTGGAAAAAACAAATCAACGTTGTGAAGTATATAGAGCAAATCTCCTAGCTGTTCTAAGGGACATGGAAGAACAGAAGTTGAAGCTATCTGTGAAGGTCCAAAATGCAAGGCTTAGTTTGAAAGAGTGA 1965 41.27 MEMVKIGTLERSAKRSDNRYRHWYFSDRAPTFILTNYGLEFFFLLPICPQFVSLSSPASIASNRESLQLSVHRTNPVIYILKDRKGDGSPLGSISRLLFSSSLEMSGGRQRTLVVGIQHVLDYLKRMQAENPAFYYAVQGDGDHHSGANIFWADATCRMNYTYFGDTVVLDTTFRTNQYRVPLAAFSGFNHHGQPVLFGCALVLYESESSFIWLFQTWLQAMSGRQPISITTDPDRLIQVAVAQVLPGTRHRFCKWAIFRETQEKLSHLCQSHPTFETEFRKCVNEAETIEEFESCWEALLNRYYIMDNEWLQLMYGARQQWVPVYMRDTFFGEMSINESYKSLNLFFDGYVTASTSMQMLVRQYEKAMASWHEKELKADYDTIDSMPVLKTPSPMEKQAADLYSRRIFRKFQEELVETLANPATKIDDTGTVATYRVAKFGEDHKAHAVSFNSLEMKANCSCQLFEYLGIICRHILAVFRAKNVLTLPSQYVLKRWTRNARNGAVIDDHDSELPNEAGDSSTVRYNNLRQGAIKYVEEGAKSIHIYNVAMEALKEASRKVAAVKNRGPGATNGDIMANGVVGVLVATEENQTATYQSVEQKEKKIRELSAELEKTNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14709199 14712255 + MELO3C013479.2.1 Cme11g01021 341684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01021 654 ProSiteProfiles Zinc finger SWIM-type profile. 446 484 IPR007527 GO:0008270
Cme11g01021 654 Coils Coil 596 626 - -
Cme11g01021 654 Pfam MULE transposase domain 168 259 IPR018289 -
Cme11g01021 654 Pfam SWIM zinc finger 436 484 IPR007527 GO:0008270
Cme11g01021 654 SMART 26again6 459 486 IPR006564 GO:0008270
Cme11g01021 654 Coils Coil 631 651 - -
Cme11g01021 654 PANTHER PROTEIN FAR1-RELATED SEQUENCE 9 111 628 - -
Cme11g01021 654 Coils Coil 547 567 - -
Cme11g01021 654 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 111 628 IPR031052 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01021 - - - csv:101214237 1076.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02593 Cme-Chr1:33674563 Cme11g01021 Cme-Chr11:14709199 3.76E-94 transposed
Cme02g00421 Cme-Chr2:3493941 Cme11g01021 Cme-Chr11:14709199 0 transposed
Cme04g00421 Cme-Chr4:3338374 Cme11g01021 Cme-Chr11:14709199 1.09E-87 transposed
Cme06g00661 Cme-Chr6:4259450 Cme11g01021 Cme-Chr11:14709199 8.82E-105 transposed
Cme08g00014 Cme-Chr8:109011 Cme11g01021 Cme-Chr11:14709199 2.56E-103 transposed
Cme12g01539 Cme-Chr12:22856687 Cme11g01021 Cme-Chr11:14709199 3.39E-101 transposed
Cme01g01904 Cme-Chr1:27446109 Cme11g01021 Cme-Chr11:14709199 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01021 Cme_Chr11 FPKM 0.55534 0.679936 0.957569 1.688733 2.763083 3.687457 3.872652 1.016279 1.258881 1.165579