Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01027 ATGAATTTCAAATCTCTCCATTTTCTCCTTTCCATTATAACTCTTTTCTTCTTTCTATCAATTTCTACTTCTGAACAAAACCCATCGTCTCCCTCTGCAATCATATCCAGGTTCCAACAATACCTTCAGATTAATACCGTCCAACCCAGCCCCCAATACTATGAAGCTGCTGATTTCATCATTTCTCAGGCCAAATCGCTCTCCCTTGAATCTCACACAATTGAATTCGTCGAGGGCAAGCCTCTGATCATCCTCAAATGGCCTGGTTCCAACCTTGATCTTCCTTCCATTCTCCTCAATTCGCATACCGATGTTGTTCCAGCTGAGCATCACAAATGGACGCACCCTCCTCTTGGAGCTCATATCGATTCCCATGGCAATATCTATGCAAGAGGGTCTCAGGACATGAAGTGCGTTGGGATGCAGTACCTTGAGGCTATTCGGCGTTTGAAGGCATCTGGGTTTCAGCCTCTGCGCTCTGTTTATTTATCTTTTGTCCCGGATGAAGAAATTGGTGGCCATGGTGGTGCTGAGAAATTTGCTGAATCCGATGAGTTCAAGAAATTGAATGTCGCCATTGTGCTTGATGAAGGGTTGCCTTCTCCGGGTGAGAATTATAGGGTGTTTTATGGGGAAAAGAGCCCCTGGTGGCTAGTGATCAAGGCGGTGGGAGCCCCAGGTCATGGAGCTAGGCTTTACGATAACACTGCCTTGGAGAATCTTTTCAAAAGCATTGAGACTGTCAGAAGGTTCAGAGCTTCACAGTTTGATTTGATCAAAGCTGGTTTGAAGACTGAAGGAGATGTGGTCTCTGTCAACATGGTCTTCTTAAAATCTGGCATTCCATCTCCTACTGGCTTTGTCATGAATCTGCAGCCATCTGAAGCTGAGGCTGGTTTTGACGTTCGCCTCCCACCAACTACAAATCCGGAGTCTCTTGAGAGACGAATTGCAGAGGAATGGGCACCAGCTTCTCGTAATATGACGTTTGAGTTTAAGCAGAAGGAGTCTATTTACGACAAGTTTGGTAAACCAGCTCTTACTGCTATTGACAAATCCAACCCGTGGTGGAATCTTCTTGAAGAAGCTGTAAGAAATGCGAATGGAAAACTTGCAAACCCAGAAATCTTTCCTGCTTCAACGGATGCTCGATACTTTCGAAATCTTGGCCTCCCTGCAATCGGCTTCTCTCCAATGGTCAACACTCCTATTCTTCTTCATGACCATAATGAGTTTCTAAACCAAGCTGAGTATTTGAAAGGCATTGAGGTGTATGAGTCAATAATCAAGGCTTATGCTTCTTACGACGGTGACAAACGGATGGAGAGCTTCAAAGATGAGTTATAA 1347 44.69 MNFKSLHFLLSIITLFFFLSISTSEQNPSSPSAIISRFQQYLQINTVQPSPQYYEAADFIISQAKSLSLESHTIEFVEGKPLIILKWPGSNLDLPSILLNSHTDVVPAEHHKWTHPPLGAHIDSHGNIYARGSQDMKCVGMQYLEAIRRLKASGFQPLRSVYLSFVPDEEIGGHGGAEKFAESDEFKKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGARLYDNTALENLFKSIETVRRFRASQFDLIKAGLKTEGDVVSVNMVFLKSGIPSPTGFVMNLQPSEAEAGFDVRLPPTTNPESLERRIAEEWAPASRNMTFEFKQKESIYDKFGKPALTAIDKSNPWWNLLEEAVRNANGKLANPEIFPASTDARYFRNLGLPAIGFSPMVNTPILLHDHNEFLNQAEYLKGIEVYESIIKAYASYDGDKRMESFKDEL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14848958 14851875 + MELO3C013482.2.1 Cme11g01027 341690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01027 448 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 133 172 IPR001261 -
Cme11g01027 448 CDD M20_AcylaseI_like 35 433 - -
Cme11g01027 448 SUPERFAMILY Zn-dependent exopeptidases 32 433 - -
Cme11g01027 448 Gene3D Zn peptidases 26 216 - -
Cme11g01027 448 Pfam Peptidase family M20/M25/M40 98 430 IPR002933 GO:0016787
Cme11g01027 448 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 31 434 IPR010159 GO:0004046|GO:0005737|GO:0006520
Cme11g01027 448 PIRSF ACY-1 23 437 - -
Cme11g01027 448 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 97 106 IPR001261 -
Cme11g01027 448 Gene3D - 354 434 - -
Cme11g01027 448 Gene3D - 217 327 - -
Cme11g01027 448 PANTHER AMINOACYLASE-1 16 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01027 K14677 ACY1; aminoacylase [EC:3.5.1.14] - csv:101213747 865.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01952 Cme-Chr2:25813676 Cme11g01027 Cme-Chr11:14848958 0 dispersed
Cme04g01290 Cme-Chr4:18008795 Cme11g01027 Cme-Chr11:14848958 2.31E-18 dispersed
Cme08g01328 Cme-Chr8:10138184 Cme11g01027 Cme-Chr11:14848958 9.90E-89 dispersed
Cme11g01027 Cme-Chr11:14848958 Cme12g00930 Cme-Chr12:16324163 4.54E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01027 Cme_Chr11 FPKM 0.0 0.0 2.357323 2.212241 14.362575 9.592967 13.522611 0.080687 0.06838 0.0