Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01052 ATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCATTTCTAATGGGGTTCTTCAAGAAACTGTAGATGTCACTAAATGTTTGGCGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGCTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCATGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGCTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCAACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTAGTTTTTTCTAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGATCTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAATTAGACACAGAGGTATGGACAATAATGTTGCTCTTGATGGTCCTGTTGTGTCGAAAAGTCTGCGACGATGTCAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGCATTCTAACCACCGTACCTGCCCGAAAACCGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGAATAACTATAACTTGCCGAAGAAGGAAGTAGTTGCCGGAATGGGAGATACTCCACCCGATCTCGCTCGAGAAATCTCCTCTTTAGTCCACAATCTATCATCGAGCCAGTTGGATATCCAGAGAGAGGCTATTATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTTATAGCGAGAGAAGGAGCAATTCCAGCTATCATAGAAATCCTGCAGTGTGGAACGGAGGAGGCTAAGGAAAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGACGAAAACAAGGTTCTGATTGGTTCTCTAAAGGGAATTCCGCCATTAGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCAACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCCGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGGCCGAGATCGGTAATAACTCTTTCATTGAGATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAGTGTGCTACATCGTTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGTGTATACGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA 1872 42.95 MERQYGSNSLSPCSSISNGVLQETVDVTKCLAEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHAVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLDLRKIADLEAETIAVQKLIRHRGMDNNVALDGPVVSKSLRRCQSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLHSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKNNYNLPKKEVVAGMGDTPPDLAREISSLVHNLSSSQLDIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQCGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRAEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15335584 15339374 + MELO3C013502.2.1 Cme11g01052 341715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01052 623 Pfam U-box domain 249 319 IPR003613 GO:0004842|GO:0016567
Cme11g01052 623 Coils Coil 146 166 - -
Cme11g01052 623 Gene3D - 482 621 IPR011989 -
Cme11g01052 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 507 IPR000225 GO:0005515
Cme11g01052 623 Pfam Armadillo/beta-catenin-like repeat 413 452 IPR000225 GO:0005515
Cme11g01052 623 Pfam Armadillo/beta-catenin-like repeat 372 411 IPR000225 GO:0005515
Cme11g01052 623 Pfam Armadillo/beta-catenin-like repeat 455 493 IPR000225 GO:0005515
Cme11g01052 623 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Cme11g01052 623 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 620 - -
Cme11g01052 623 Gene3D - 26 139 IPR036537 GO:0007166
Cme11g01052 623 SUPERFAMILY ARM repeat 343 617 IPR016024 -
Cme11g01052 623 SUPERFAMILY RING/U-box 249 323 - -
Cme11g01052 623 SMART arm_5 495 535 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 578 618 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 454 494 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 413 453 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 536 576 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 372 412 IPR000225 GO:0005515
Cme11g01052 623 PANTHER U BOX DOMAIN-CONTAINING 28 620 - -
Cme11g01052 623 Gene3D - 335 479 IPR011989 -
Cme11g01052 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Cme11g01052 623 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Cme11g01052 623 CDD RING-Ubox_PUB 253 295 IPR045210 -
Cme11g01052 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 383 425 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01052 - - - csv:101214151 1162.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00333 Cme-Chr9:2834562 Cme11g01052 Cme-Chr11:15335584 1.13E-35 dispersed
Cme11g01052 Cme-Chr11:15335584 Cme11g01284 Cme-Chr11:19590109 5.55E-156 dispersed
Cme12g00198 Cme-Chr12:2050619 Cme11g01052 Cme-Chr11:15335584 1.35E-27 dispersed
Cme02g00465 Cme-Chr2:4268799 Cme11g01052 Cme-Chr11:15335584 1.98E-13 transposed
Cme03g01335 Cme-Chr3:22896656 Cme11g01052 Cme-Chr11:15335584 2.09E-16 transposed
Cme01g01943 Cme-Chr1:27812459 Cme11g01052 Cme-Chr11:15335584 2.13E-22 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007785 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01052 Cme_Chr11 FPKM 25.958462 31.235823 51.827553 47.829967 15.752753 17.679359 16.938005 80.80658 78.520393 84.253075