Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01078 ATGGAAACAAAGAAAGTGGCGGTCGTGGGTGCTGGATTAAGCGGACTAATAGCTTGCAAATTAATTTTATCCAAAGGATTAACCCCAATTGTGTTCGAAGCTAAAGACGTGATTGGTGGCCTTTGGAATGACACCATTGAGTCTACGGTATTACAAACGCGTAGACAAATGTTTGAGCTCTCCGATTTTCCTTGGCCAAAATCGGTGACAGAAGAATACCCAAGGTATGATCAAGTTCTTGATTACCTCAGATCTTACGCCGAACATTTTGGATTGTTTAAGTATATCAGACTCAACACAAAAGTCTTAAGCATCGAATACGAAGGATTCTCCGATGAGGAGATCAATAGTTGGACTTATTGGGGTGGCTCTGGCAACGCTTTTTCTGAACGGAGTAAATGGAAGCTCAGTCTCGTTGATGCTCGAACTAATCTTCCACTCCAGGAGGAGGTGGTAGATTTCGTAGTACTCTGCACAGGCAAATTCGGCGACATTCCAAATATCCCGAAATTCCCTCCCAATGGCGGCCCTAAAGCTTTCAGAAACGGTAAAGCTCTTCATTATATAGAATATGCGGCCTTGGATTTCGACAATGCTACGAAGCTTGCCAAGGACAAGAGAATTGCCGTCGTTGGATTTCAAAAGTCTGCGTTGGAGCTTATCAGAGAATTCACCAATTTAATTGGCACTAGCAAACCCTGCACTTTGATTTACAAAACTGAGTATTGGAACCCTCCCGATGGTCAACCATGGGGGATTCATATCGATTATCTTTTCGCAAGCCGATTTGCCGAGCTTCTGATTCATAAACCTAGCGAGGGTTTCCTTCTCTATCTCCTCGCCATGCTTCTTGCCCCAATTAGATGGTTGATCACGAAGTTGGTGGAATTCCACGTGAGGAGGAAGACAAAAATGGACAAATACGGGATGGTGCCAAAACATAGCATTTTACAGGACGTCACTTCATGTAGATACGCAGTATTGCCTGAGAGATTCTACGAAAGAGTGGAGGAAGGAAGTATAGTTTTGAAGAAAGCACCAAGTTTCAGCTTCTGTGAAGAGGGTATCATGATCGAAGGAGAAACCAAACCGATTCCCTTAGATTTGGTCATTTTGGCTACTGGATATAGAGGTGATTTGAAGTATAAAAATATTTTTGCTTCCTCTACTTTTCGGGATTACATGAATTTTGGTGATGCAGCACTTCCCCTATACAGGCTATGTATTCATCCCAGAATCCCACAAGTAGCCGTGATTGGACTTACAGAAAGCATTTCGAACTTGTACACCTCAGAGATAAGGTGTCGATGGTTGGTGGAGTTTCTTGCCGGTACATTCAAGCTACCAAGCATCAAGGAGATGGAGAAGGACATAGAAAACTGGGAGAGGTGTCTAAAGCTTTACTCAGGAGAGTCTTATTGGCGAGGTTGCATTGGCATGTTGCATCATCATTACAATGATCAAGTGTGCAAAGACATAGGGTGGAACCCCAGAAGGAAGAAGGGCTTCTTTGCTAACTTGTTTGTCCCTCATCGCCCTGCAGACTATGCCTCCCCTGATAATTGGTAA 1569 43.53 METKKVAVVGAGLSGLIACKLILSKGLTPIVFEAKDVIGGLWNDTIESTVLQTRRQMFELSDFPWPKSVTEEYPRYDQVLDYLRSYAEHFGLFKYIRLNTKVLSIEYEGFSDEEINSWTYWGGSGNAFSERSKWKLSLVDARTNLPLQEEVVDFVVLCTGKFGDIPNIPKFPPNGGPKAFRNGKALHYIEYAALDFDNATKLAKDKRIAVVGFQKSALELIREFTNLIGTSKPCTLIYKTEYWNPPDGQPWGIHIDYLFASRFAELLIHKPSEGFLLYLLAMLLAPIRWLITKLVEFHVRRKTKMDKYGMVPKHSILQDVTSCRYAVLPERFYERVEEGSIVLKKAPSFSFCEEGIMIEGETKPIPLDLVILATGYRGDLKYKNIFASSTFRDYMNFGDAALPLYRLCIHPRIPQVAVIGLTESISNLYTSEIRCRWLVEFLAGTFKLPSIKEMEKDIENWERCLKLYSGESYWRGCIGMLHHHYNDQVCKDIGWNPRRKKGFFANLFVPHRPADYASPDNW 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15908163 15915018 + MELO3C034758.2.1 Cme11g01078 341741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01078 522 Coils Coil 451 471 - -
Cme11g01078 522 SUPERFAMILY FAD/NAD(P)-binding domain 1 248 IPR036188 -
Cme11g01078 522 Gene3D - 2 276 IPR036188 -
Cme11g01078 522 SUPERFAMILY FAD/NAD(P)-binding domain 359 516 IPR036188 -
Cme11g01078 522 PIRSF FMO 2 506 IPR000960 GO:0050660|GO:0050661
Cme11g01078 522 PANTHER DIMETHYLANILINE MONOOXYGENASE 3 517 - -
Cme11g01078 522 Pfam Flavin-binding monooxygenase-like 4 469 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cme11g01078 522 Gene3D - 357 502 IPR036188 -
Cme11g01078 522 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cme11g01078 522 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 3 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01078 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - csv:101210999 1028.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01060 Cme-Chr11:15640213 Cme11g01078 Cme-Chr11:15908163 0 dispersed
Cme11g01078 Cme-Chr11:15908163 Cme06g02609 Cme-Chr6:33344745 2.73E-13 dispersed
Cme11g01078 Cme-Chr11:15908163 Cme11g01079 Cme-Chr11:15918601 1.08E-51 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi10g01244 . . . . . . . . . . . . . . . . Cme11g01078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000621 2 8 2 2 1 4 2 5 5 4 3 5 4 3 4 4 4 1 1 3 4 3 2 4 4 3 1 4 3 7 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01078 Cme_Chr11 FPKM 38.46788 41.199348 30.223673 34.592381 48.907101 61.565243 45.752853 34.245247 39.228664 31.511032