Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01081 ATGAAGAATGACAACGAATCGCAGGTTTCCGATCACTTTCAGAGACCCAGAAAGCCGAAATCGCGTGAGGTAAGTTCCCGATTTCTCTCGTCGGCCTATACAACTGAGATCACCACTGCATCGTCGTCGTCGTCGTCTCCCACTCAACCTCTTTCGCCCACTCATGGGAAATCAAGATATGATGCTCGTAAGCACCGAGGCCAACAAGGGTCCTTACTTGTTCATGGACTCTGGCCTTCTTCGACTACTGAGAGATTCGATACTCTGGCTGATCATCTCAGAAATGAACGATTGAAGGACGAGAAATTCTCTGGAAATCCCTCACTCAATAAACTGAGAGGTTCCAGAGATTTGAGTAATTTCGAACCAAAAGAGAGATTCGCCAAAGAAAACGATAGACCCATTATTGGCGGTTCTTCGAGATATTGCGGGAAACTACAGGGGAAAAACGTAAGCTCTTCATTGTCGAAATTACCAGTACAAAGCTCTGAATCTGCGAGATTGTCAGTGGATGAGAATGCTCTGTTAGGAAGATCATCTAGAAAACGATCAGACAATTTCAAGAACAGTTTTGACTTAGAATCGGATTACAACGATATTAGGTCTCCGATGATGGTGGGAAAAACGCCGACTATAGTCTGCCAGAGGTCGGGTTTGGTGGTTCCTTCCAAGTATATGAATGATGTAACATCACGAAGGCTTCAAAGAGGGTCTTCTGATTCAAGCCTCCCAACTCCTGTTTCATTCGAAGGTTCTCCAACAGCAAAGAAAAATTCTGTAAAATACCCAATACAACGAGCTAATTCAATTTCGGGACGTGGGAGTTCAAGGTCGCAGTGGGCATTATCGCCTGGACGGTCAGGTTCGCCGATGATGTCAGTCGAGAGCAAGGAAAAATCCATGTCGTTTTCTAGTCTAAAACCCATAACAACTTCATCAAAAGGCGCAACAGGTATGGAGAAGTTACTTAACTTGGGATTGGACTTGTTCAAGAGCAGAAAATCTTGGATTTCCACCACATTATCCCCTGTAAGACCAGTAGTTTCTGATAATGTTCATCATCTTAGAATGTTACATAATCGATTGGTGCAGTGGCGTTTTGCCAACGCTAAAGCTCAGTCTGCAACTGAAAACTTGGCTAATTTAGTAGAGAAAAATTTGGCAAGTACTTGGTATAACATTGCTAAGTTGCAGCAGTCAGTTCAACAAAAGAAGTTGCAGCTCCAAAAAGAAAAGCTCCAATTCAAGTTGAACTTCTTTCTCCATTCTCAACTGAGGCCATTGGAAAGATGGGGAGCTATGGAAAGACAACATTTAACTGCAGTTTCTATGACCAAAGATTGTTTACATTCTGTTATCTGCAGGGTGCCACTCACTGAAGGTGCAAAGATTGATGCTCAAAAAATTTCCATGGCATTCAAGCAAGCTTCTGATGTTGCAATCTCTATGATGTCCATGGTGACTATATACGCGCCAGTGGCCATGAAAACTGCTTCCTTGCTTTCAGAATTAGCAAGAGTGGTGATACATGAGAGATTGCTTTTAGAGGAGGTATTTGAACTCCACCAAACCGTATCAGCACTAGAGATGGAAGAAATGAGTTTGAAAGGTGCTATTATTCAAATGAAAACAAGGCAGCATCATCATCTGAAGCTACGAGGAAGAAATATAGAAACTCCAATTACATGA 1689 42.51 MKNDNESQVSDHFQRPRKPKSREVSSRFLSSAYTTEITTASSSSSSPTQPLSPTHGKSRYDARKHRGQQGSLLVHGLWPSSTTERFDTLADHLRNERLKDEKFSGNPSLNKLRGSRDLSNFEPKERFAKENDRPIIGGSSRYCGKLQGKNVSSSLSKLPVQSSESARLSVDENALLGRSSRKRSDNFKNSFDLESDYNDIRSPMMVGKTPTIVCQRSGLVVPSKYMNDVTSRRLQRGSSDSSLPTPVSFEGSPTAKKNSVKYPIQRANSISGRGSSRSQWALSPGRSGSPMMSVESKEKSMSFSSLKPITTSSKGATGMEKLLNLGLDLFKSRKSWISTTLSPVRPVVSDNVHHLRMLHNRLVQWRFANAKAQSATENLANLVEKNLASTWYNIAKLQQSVQQKKLQLQKEKLQFKLNFFLHSQLRPLERWGAMERQHLTAVSMTKDCLHSVICRVPLTEGAKIDAQKISMAFKQASDVAISMMSMVTIYAPVAMKTASLLSELARVVIHERLLLEEVFELHQTVSALEMEEMSLKGAIIQMKTRQHHHLKLRGRNIETPIT 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15933818 15936406 - MELO3C013532.2.1 Cme11g01081 341744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01081 562 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g01081 562 MobiDBLite consensus disorder prediction 25 55 - -
Cme11g01081 562 Pfam QWRF family 210 516 IPR007573 -
Cme11g01081 562 PANTHER AUGMIN FAMILY MEMBER 14 550 - -
Cme11g01081 562 MobiDBLite consensus disorder prediction 232 299 - -
Cme11g01081 562 PANTHER QWRF MOTIF PROTEIN (DUF566)-RELATED 14 550 - -
Cme11g01081 562 Coils Coil 394 414 - -
Cme11g01081 562 MobiDBLite consensus disorder prediction 1 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01081 - - - csv:101211249 903.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00006 Cme-Chr4:40288 Cme11g01081 Cme-Chr11:15933818 5.37E-22 dispersed
Cme07g00296 Cme-Chr7:1927891 Cme11g01081 Cme-Chr11:15933818 8.53E-20 dispersed
Cme11g01081 Cme-Chr11:15933818 Cme05g01482 Cme-Chr5:24263602 5.91E-30 dispersed
Cme11g01081 Cme-Chr11:15933818 Cme02g01041 Cme-Chr2:15344630 1.08E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g185 . . . . . . . . . . Cma02g00268 Cma20g00741 . Car20g00643 . . . . . . . . . . . . . . . . . . Cone8ag1299 . . Lsi10g00505 . Chy11g00245 . . . . . . . . . Sed01g0181 Cmo02g00265 Cmo20g00739 . . . . Cpe16g00324 Cpe05g01364 Bhi10g01827 Tan05g1113 Cmetu11g1096 . Hepe08g0306 . . Cla02g01179 Cam02g1258 Cec02g1267 Cco02g1307 Clacu02g1240 Cmu02g1207 Cre02g1522 . Csa02g01404 . Cme11g01081
Vvi12g505 . . . Bda13g00647 . . . . . . . . . . . . . . . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Cone3ag1386 Cone10ag1319 . . . . Chy11g01082 . . . . . Bpe14g00673 . Bma02g01357 Bma12g00758 Sed01g0684 . . . . . . Cpe16g00475 . Bhi10g01174 Tan05g0809 Cmetu01g1616 . Hepe08g0514 . . . . . . . . . . Csa06g01049 . Cme11g01081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009210 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01081 Cme_Chr11 FPKM 6.312724 7.070763 16.252869 16.279827 67.24324 58.939686 62.305836 21.683765 23.449692 22.559044