Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01086 ATGAGGTGGAATTCATTCTACACCAAAGCTTCTAATGCTTTTCGTGATCATCCTTCCATATCTAAGCTTCTCATTGTTTTCACTGTCAGTGGTGGTGGACTGGTAGCAGCTACTAATGGCAGATCTCTGTATCATTCTGTGTACGCCGATGCATTCCAACAAGATGGTTACTGCAAGAAAAAGAAAGTAGTGGTGCTTGGAACAGGATGGGCTGGCACAAGTTTTTTGAAGAATCTCAAGAGTTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACGTGTGGCACGGTTGAAGCTCGCAGCATTGTTGAACCGATTCGTACTATTACAAAGAAGAAAGGTCTGGATATTGAATTTAGGGAAGCTGAGTGCTATAAGATAGATGCAGAGAAAAAGGTGGTATTCTGTAGATCAATTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGATTATGACTATCTGATTATAGCCATGGGAGCTAAATCCAACACTTTCAACATACCCGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACTGTAATTGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGTCCAACTGGAGTGGAATTTGCAGCAGAGCTTCATGACTTCGCAGTTGAGGATTTAGCAGCATTGTATCCTTCATTGAAAGACTACGTGAAAATAACCCTCTTGGAGGCAGGAGATCATATTTTGAACATGTTTGACAAGAGAATTACTGCTTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAACTAAAAACTGGTTCCATGGTCGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTATCCATTCCTTTTGGAATGGTTGTCTGGTCTACCGGCATAGGCCCTCGTCCTCAAGTCATTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGCGTCTACGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCAGTAAGGCAGACAAGGATAAGTCGGGAGCTTTAGCCCTGCAAGAATTTCAAGAAGTCGTAGATGACATTTGTGAGAGGTACCCTCAAGTTGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAAAAGACACAATCCGACACACAGAAACAGTCGACCGAACTGGATATTGAGAGCTTTAAGTCCTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGATCAATGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACAGGACGCCACAGATTTCATCCCTTCAGGTACAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTACCTGGGGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTCTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGCAGAAGATTTGTATTTGGCAGGGATTCAAGCAGAATCTGA 1758 42.78 MRWNSFYTKASNAFRDHPSISKLLIVFTVSGGGLVAATNGRSLYHSVYADAFQQDGYCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRTITKKKGLDIEFREAECYKIDAEKKVVFCRSIQDTNLGGREEFSVDYDYLIIAMGAKSNTFNIPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAALYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFQRDGIELKTGSMVVKVTDKEISTKERATGEFVSIPFGMVVWSTGIGPRPQVIDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAVIFSKADKDKSGALALQEFQEVVDDICERYPQVEIYLKKKQMKNFAALLKKTQSDTQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMDQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFVFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16008141 16011263 + MELO3C013534.2.1 Cme11g01086 341749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01086 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 386 IPR023753 GO:0016491
Cme11g01086 585 PANTHER NADH DEHYDROGENASE 4 585 IPR045024 GO:0003954|GO:0006116
Cme11g01086 585 Gene3D - 53 432 - -
Cme11g01086 585 Gene3D - 433 584 - -
Cme11g01086 585 SUPERFAMILY EF-hand 340 463 IPR011992 -
Cme11g01086 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Cme11g01086 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Cme11g01086 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Cme11g01086 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Cme11g01086 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cme11g01086 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Cme11g01086 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Cme11g01086 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Cme11g01086 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Cme11g01086 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Cme11g01086 585 PANTHER - 4 585 - -
Cme11g01086 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g00362 Cme11g01086 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00332 Cme-Chr8:2110295 Cme11g01086 Cme-Chr11:16008141 3.87E-13 dispersed
Cme10g00169 Cme-Chr10:1165548 Cme11g01086 Cme-Chr11:16008141 8.09E-06 dispersed
Cme11g01086 Cme-Chr11:16008141 Cme12g01401 Cme-Chr12:21873153 0 dispersed
Cme11g01086 Cme-Chr11:16008141 Cme01g00362 Cme-Chr1:2659948 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01086 K03885 - csv:101209855 1141.33