Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01134 ATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGCCCCATCCAATGCTTCTTCATGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAATGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTCTCGCCTCAGAGAGCATCTCAAATTCTCTGGAGTACTGGAATGCTTTGTGAACCTATTCCAGATGGGTTCTATTCTGTTATTCTGGATAAAAGGCTAAAAGAGCGGTTTCACAGCATTCCTTCCCTGGACGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGGAATGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAATTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTCTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGGTGCTCTTGAAGAAACCTCCCACTTGTTCGAGGATAGAGGCATTCAATTGCTTGGACAAATAAAATTTGGTTCTTGTCGTCCTAGAGCTATCTTATTTAAGGCTCTGGCAGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCAAATGAGGGGGCTATTGGGTGCGTAGATTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGGTTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCCATTTTTATGACCCATATTTCTGCTGCTGGTGAAAGCGATTCTGCAGAAAACGACTCCTGTGATTCGCCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCGGAAAGAGTTGATCCTGACAGTGTCGAGAAAGATGAGAGCCTCCAATTCCACAGAAAATTTGATGCAGCTTCAAATGCACATGGTCATTCATTGCGCAATATGATGTTGCGATCAAATACAGCACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCTCGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGACGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACGTCAGAAGCTCGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGGACAAGAAGATGACAGGTCGTTCTCCCATCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCGGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCTTTACCATCATCGCCTCACGTGTACAGGGGTCAAACCTCTGATGGAATTGGGCATTCAGCGTACGGGAATGATGAATTAACCTTTAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCATTGTTACCTTACCCAGAGTGGAACATTGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTCCGTGGTATTTGGAATGGAACAGATGTCGCAATCAAAGTTTTCCTAGAACAAGATTTAACTCCTGAGAACATTGAGGACTTCTGTAATGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCTTGTATTCCTTGATTCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGATATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGAGACCTGAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACAGTTAAGATATGCGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATCTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAACAGACCGTGGGAGGGTGTCCCACCAGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGGTCCCGCCTCGAGATTCCCGAAGGCCCGCTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATCCTCTCGCGCTTGCTGGACTGCGAGTACTCACTTTCTTGA 2397 44.01 MEDQRDDVAPSEQAPSNASSWWSSDFEEKFGSVSLGPREDIVNEKEEIINSDQDVFSPQRASQILWSTGMLCEPIPDGFYSVILDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLNSNPAAIIKKIAGLVSDFYKRPILESPAKGALEETSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSVEKDESLQFHRKFDAASNAHGHSLRNMMLRSNTALDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGQEDDRSFSHPSNERNSSSDVRRNDQVGSQRAISLPSSPHVYRGQTSDGIGHSAYGNDELTFKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17137716 17148530 - MELO3C013571.2.1 Cme11g01134 341797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01134 798 MobiDBLite consensus disorder prediction 384 401 - -
Cme11g01134 798 MobiDBLite consensus disorder prediction 448 472 - -
Cme11g01134 798 MobiDBLite consensus disorder prediction 473 495 - -
Cme11g01134 798 Gene3D Transferase(Phosphotransferase) domain 1 621 797 - -
Cme11g01134 798 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 796 - -
Cme11g01134 798 ProSitePatterns Protein kinases ATP-binding region signature. 548 569 IPR017441 GO:0005524
Cme11g01134 798 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 30 796 - -
Cme11g01134 798 MobiDBLite consensus disorder prediction 362 419 - -
Cme11g01134 798 ProSiteProfiles Protein kinase domain profile. 542 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01134 798 MobiDBLite consensus disorder prediction 446 500 - -
Cme11g01134 798 Gene3D Phosphorylase Kinase; domain 1 535 620 - -
Cme11g01134 798 MobiDBLite consensus disorder prediction 273 293 - -
Cme11g01134 798 SUPERFAMILY Protein kinase-like (PK-like) 519 790 IPR011009 -
Cme11g01134 798 MobiDBLite consensus disorder prediction 1 23 - -
Cme11g01134 798 SMART serkin_6 542 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01134 798 Pfam Ethylene-responsive protein kinase Le-CTR1 59 254 - -
Cme11g01134 798 CDD STKc_MAP3K-like 548 790 - -
Cme11g01134 798 Pfam Protein tyrosine and serine/threonine kinase 543 790 IPR001245 GO:0004672|GO:0006468
Cme11g01134 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01134 Cme-Chr11:17137716 Cme12g01838 Cme-Chr12:24732892 4.83E-09 dispersed
Cme11g01134 Cme-Chr11:17137716 Cme04g02435 Cme-Chr4:30989682 4.42E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65241 PF07714 PK_Tyr_Ser-Thr 4.40E-59 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01134 - - cmo:103490492 1593.17