Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01134 | ATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGCCCCATCCAATGCTTCTTCATGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAATGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTCTCGCCTCAGAGAGCATCTCAAATTCTCTGGAGTACTGGAATGCTTTGTGAACCTATTCCAGATGGGTTCTATTCTGTTATTCTGGATAAAAGGCTAAAAGAGCGGTTTCACAGCATTCCTTCCCTGGACGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGGAATGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAATTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTCTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGGTGCTCTTGAAGAAACCTCCCACTTGTTCGAGGATAGAGGCATTCAATTGCTTGGACAAATAAAATTTGGTTCTTGTCGTCCTAGAGCTATCTTATTTAAGGCTCTGGCAGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCAAATGAGGGGGCTATTGGGTGCGTAGATTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGGTTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCCATTTTTATGACCCATATTTCTGCTGCTGGTGAAAGCGATTCTGCAGAAAACGACTCCTGTGATTCGCCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCGGAAAGAGTTGATCCTGACAGTGTCGAGAAAGATGAGAGCCTCCAATTCCACAGAAAATTTGATGCAGCTTCAAATGCACATGGTCATTCATTGCGCAATATGATGTTGCGATCAAATACAGCACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCTCGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGACGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACGTCAGAAGCTCGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGGACAAGAAGATGACAGGTCGTTCTCCCATCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCGGAGAAATGATCAAGTGGGTTCTCAAAGAGCAATATCTTTACCATCATCGCCTCACGTGTACAGGGGTCAAACCTCTGATGGAATTGGGCATTCAGCGTACGGGAATGATGAATTAACCTTTAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCATTGTTACCTTACCCAGAGTGGAACATTGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTCCGTGGTATTTGGAATGGAACAGATGTCGCAATCAAAGTTTTCCTAGAACAAGATTTAACTCCTGAGAACATTGAGGACTTCTGTAATGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCTTGTATTCCTTGATTCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGATATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGAGACCTGAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACAGTTAAGATATGCGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATCTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAACAGACCGTGGGAGGGTGTCCCACCAGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGGTCCCGCCTCGAGATTCCCGAAGGCCCGCTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATCCTCTCGCGCTTGCTGGACTGCGAGTACTCACTTTCTTGA | 2397 | 44.01 | MEDQRDDVAPSEQAPSNASSWWSSDFEEKFGSVSLGPREDIVNEKEEIINSDQDVFSPQRASQILWSTGMLCEPIPDGFYSVILDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLNSNPAAIIKKIAGLVSDFYKRPILESPAKGALEETSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSVEKDESLQFHRKFDAASNAHGHSLRNMMLRSNTALDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGQEDDRSFSHPSNERNSSSDVRRNDQVGSQRAISLPSSPHVYRGQTSDGIGHSAYGNDELTFKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS | 798 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 17137716 | 17148530 | - | MELO3C013571.2.1 | Cme11g01134 | 341797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 384 | 401 | - | - | |
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 448 | 472 | - | - | |
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 473 | 495 | - | - | |
Cme11g01134 | 798 | Gene3D | Transferase(Phosphotransferase) domain 1 | 621 | 797 | - | - | |
Cme11g01134 | 798 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 30 | 796 | - | - | |
Cme11g01134 | 798 | ProSitePatterns | Protein kinases ATP-binding region signature. | 548 | 569 | IPR017441 | GO:0005524 | |
Cme11g01134 | 798 | PANTHER | MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED | 30 | 796 | - | - | |
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 362 | 419 | - | - | |
Cme11g01134 | 798 | ProSiteProfiles | Protein kinase domain profile. | 542 | 797 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 446 | 500 | - | - | |
Cme11g01134 | 798 | Gene3D | Phosphorylase Kinase; domain 1 | 535 | 620 | - | - | |
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 273 | 293 | - | - | |
Cme11g01134 | 798 | SUPERFAMILY | Protein kinase-like (PK-like) | 519 | 790 | IPR011009 | - | |
Cme11g01134 | 798 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cme11g01134 | 798 | SMART | serkin_6 | 542 | 791 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01134 | 798 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 59 | 254 | - | - | |
Cme11g01134 | 798 | CDD | STKc_MAP3K-like | 548 | 790 | - | - | |
Cme11g01134 | 798 | Pfam | Protein tyrosine and serine/threonine kinase | 543 | 790 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g01134 | 798 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 661 | 673 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g01134 | Cme-Chr11:17137716 | Cme12g01838 | Cme-Chr12:24732892 | 4.83E-09 | dispersed | |
Cme11g01134 | Cme-Chr11:17137716 | Cme04g02435 | Cme-Chr4:30989682 | 4.42E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65241 | PF07714 | PK_Tyr_Ser-Thr | 4.40E-59 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01134 | - | - | cmo:103490492 | 1593.17 |