Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01172 ATGGAAGCCAAAGAAACTAATGAAGCAGAGGCACTGCTTCAAGGCCAGGCAGAGATATGGAAATACATGCTCTGTTTTGCCGATTCAATGGCTTTAAAATGTGCCGTCGAACTTCACTTAGCCGATATCATCAACTCCCATGGCTCTCCCATCTCTCTCTCTCAGATTTCTTCCTCCATTGCCGCCTCTAACCCCTCTTCCTCACCACAAATCTCCTACCTCAATCGCATCATGAGACTCTTAGTCCGTCGAAACATCTTCGCCGCTCATCATCCATCCGACGGCGGAGACACCCTCTACGGTCTTACCCACTCCTCCAAATGGCTCCTTCGAGACTCCCCTCTCACCCTTGCTCCCATGGCGTTTTCGGAGCTTCACCAATGGATGGTCAGTCCATGGCTCTGTTTCACCGAAGCCGTTAAAGAAGGCGGAAGCCCTTTCAAAATAGCCCACGGTCTTGACATTTGGGACTTCGCTTCCAAAAACCCCCAATTCAACCATTTTTTCAACGACGCCATGGCTTCCACTTCCAAGGTCGTCATGAACGCCATCCTCTCCGTTTACCAAGATGGGTTCAACTCTCTTGACTCCCTCGCGGACGTCGGGGGCGGAATCGGGGGCTCCATCTCTGAGATCGTGAAAGCATTCCCCCACATCAAAGGAATCAATTACGATCTCCCTCACGTGATCAGCACTGCGCCGGTGTATGAAGGAGTCACCCACATCGGAGGAGACATGTTCGAAGACATTCCCAAAGTGGACGCCATTTTTATGAAGTGGATATTACACGATTGGAACGACAAAGAGTGCGTGAAAATTCTGGAGAATTGCAAGAAAGCGATACCGGAGAAAAGAGGGAAAGTGATTATCGTGGAGGTGGTGTTAAATGAAGAAGGGAAAGGAGCATTTGATGACACGAAATTCTATTTTGATCTGCTAATGCTGGCGCATACAAATGGAAAAGAGAGGACAGAGAAGGAGTGGAAAACAATACTTGAAGAAGCTGGTTTTTCTCGATACAATCTTATTCCCCTTCCTGCTTTAGTTTCCATTATTGAAGCTTATCCTTCTTGA 1074 47.95 MEAKETNEAEALLQGQAEIWKYMLCFADSMALKCAVELHLADIINSHGSPISLSQISSSIAASNPSSSPQISYLNRIMRLLVRRNIFAAHHPSDGGDTLYGLTHSSKWLLRDSPLTLAPMAFSELHQWMVSPWLCFTEAVKEGGSPFKIAHGLDIWDFASKNPQFNHFFNDAMASTSKVVMNAILSVYQDGFNSLDSLADVGGGIGGSISEIVKAFPHIKGINYDLPHVISTAPVYEGVTHIGGDMFEDIPKVDAIFMKWILHDWNDKECVKILENCKKAIPEKRGKVIIVEVVLNEEGKGAFDDTKFYFDLLMLAHTNGKERTEKEWKTILEEAGFSRYNLIPLPALVSIIEAYPS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17829136 17830624 + MELO3C013600.2.1 Cme11g01172 341835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01172 357 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 5 356 - -
Cme11g01172 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Cme11g01172 357 Pfam Dimerisation domain 30 82 IPR012967 GO:0046983
Cme11g01172 357 SUPERFAMILY Winged helix DNA-binding domain 10 114 IPR036390 -
Cme11g01172 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Cme11g01172 357 Gene3D Vaccinia Virus protein VP39 112 357 IPR029063 -
Cme11g01172 357 PANTHER O-METHYLTRANSFERASE 5 356 IPR016461 GO:0008168
Cme11g01172 357 Gene3D - 1 109 IPR036388 -
Cme11g01172 357 Pfam O-methyltransferase domain 133 338 IPR001077 GO:0008171
Cme11g01172 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01172 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101222557 650.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01207 Cme11g01172 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01207 Cme-Chr1:15280987 Cme11g01172 Cme-Chr11:17829136 1.54E-89 dispersed
Cme01g01209 Cme-Chr1:15320037 Cme11g01172 Cme-Chr11:17829136 1.90E-44 dispersed
Cme07g01213 Cme-Chr7:16583356 Cme11g01172 Cme-Chr11:17829136 1.33E-68 dispersed
Cme11g00864 Cme-Chr11:11484721 Cme11g01172 Cme-Chr11:17829136 4.27E-63 dispersed
Cme11g01172 Cme-Chr11:17829136 Cme01g00476 Cme-Chr1:3425986 2.13E-76 dispersed
Cme11g01172 Cme-Chr11:17829136 Cme11g00863 Cme-Chr11:11475396 6.06E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
Vvi12g474 . . . . Bpe12g00246 Bpe15g00687 . . . Cmo19g00918 Cma02g00114 . . . . . . . . . . . . . Cla02g01711 Cam02g1799 Cec02g1822 Cco02g1868 Clacu02g1782 Cmu02g1732 Cre02g2056 . . . . . . . . Blo04g00685 . Bda14g00746 . . . . . . Cmo02g00114 . . . . . . Cpe05g01486 . . . . . . . . . . . . . . . . . Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002929 4 1 3 1 4 2 1 2 2 1 2 2 1 1 1 1 2 4 1 2 1 3 1 1 1 1 2 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01172 Cme_Chr11 FPKM 7.920702 8.639982 84.912491 91.175476 302.943542 289.808746 319.015045 37.151501 35.755581 40.801052