Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g01184 | ATGCTGCTCTTCCTTCACCACTGTAGTTTCCGGCTCATTACAGCTTTGTTCTCTGCTGCAGCTTTGCTCCAGTGGTCCACGGCGGCGGCTCAGCTCCAACACCGTCTGCCGGATCTACATTGGCTTCCAGCCACTGCCACTTGGTACGGAAGCCCCGAGGGAGACGGTAGCGACGAAATTAAGGGATCTGACAATGTGAAGTCACAGGTGGAGCATGTGGGTATGGCTAGAGTTGGGGCTGTGAGTCCAATTTTGTTCAGAAATGGTGAGGGTTGTGGAGCTTGTTACAAAGTGAAGTGTTTAGACCACAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAGTGCCCAGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCCTTTGGCCGTATGGCCATTGCCGGAGAAGGTGGGCAGCTCAGGAACCGAGGGGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAACGAAGGCTCGACAGATTACTGGCTCTCACTGTTGGTTGAATTCGAGGATGGGGATGGAGACATCGGTGCAATGCAAATAAAAGAAAAAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGAGCAAATTGGTGCATAATTGGTGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACATTATCTACAGGAAGAGCTCTCTCAGCAAGAGATATAATCCCAAGGAATTGGTCTCCAAAAGCCACTTACACTTCCCGCCTTAATTTCTTCACTTAA | 813 | 49.69 | MLLFLHHCSFRLITALFSAAALLQWSTAAAQLQHRLPDLHWLPATATWYGSPEGDGSDEIKGSDNVKSQVEHVGMARVGAVSPILFRNGEGCGACYKVKCLDHNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKEKNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRALSARDIIPRNWSPKATYTSRLNFFT | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 18004777 | 18006862 | - | MELO3C013606.2.1 | Cme11g01184 | 341847 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g01184 | 270 | PRINTS | Expansin/Lol pI family signature | 153 | 169 | IPR007118 | GO:0005576 | |
| Cme11g01184 | 270 | PRINTS | Expansin/Lol pI family signature | 250 | 264 | IPR007118 | GO:0005576 | |
| Cme11g01184 | 270 | PRINTS | Expansin/Lol pI family signature | 82 | 100 | IPR007118 | GO:0005576 | |
| Cme11g01184 | 270 | PRINTS | Expansin/Lol pI family signature | 40 | 55 | IPR007118 | GO:0005576 | |
| Cme11g01184 | 270 | PRINTS | Expansin/Lol pI family signature | 211 | 225 | IPR007118 | GO:0005576 | |
| Cme11g01184 | 270 | PRINTS | Major pollen allergen Lol pI signature | 240 | 257 | IPR005795 | GO:0005576|GO:0019953 | |
| Cme11g01184 | 270 | PRINTS | Major pollen allergen Lol pI signature | 120 | 135 | IPR005795 | GO:0005576|GO:0019953 | |
| Cme11g01184 | 270 | PRINTS | Major pollen allergen Lol pI signature | 190 | 205 | IPR005795 | GO:0005576|GO:0019953 | |
| Cme11g01184 | 270 | PRINTS | Major pollen allergen Lol pI signature | 174 | 189 | IPR005795 | GO:0005576|GO:0019953 | |
| Cme11g01184 | 270 | PRINTS | Major pollen allergen Lol pI signature | 80 | 91 | IPR005795 | GO:0005576|GO:0019953 | |
| Cme11g01184 | 270 | PRINTS | Major pollen allergen Lol pI signature | 142 | 157 | IPR005795 | GO:0005576|GO:0019953 | |
| Cme11g01184 | 270 | PANTHER | EXPANSIN-B3 | 13 | 269 | - | - | |
| Cme11g01184 | 270 | SMART | dpbb_1 | 78 | 160 | IPR007112 | - | |
| Cme11g01184 | 270 | PANTHER | EXPANSIN-LIKE PROTEIN B1 | 13 | 269 | - | - | |
| Cme11g01184 | 270 | Gene3D | - | 26 | 166 | IPR036908 | - | |
| Cme11g01184 | 270 | SUPERFAMILY | Barwin-like endoglucanases | 40 | 169 | IPR036908 | - | |
| Cme11g01184 | 270 | Pfam | Expansin C-terminal domain | 172 | 253 | IPR007117 | - | |
| Cme11g01184 | 270 | Gene3D | - | 167 | 269 | IPR036749 | - | |
| Cme11g01184 | 270 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 50 | 170 | IPR007112 | - | |
| Cme11g01184 | 270 | Pfam | Lytic transglycolase | 80 | 159 | IPR009009 | - | |
| Cme11g01184 | 270 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 183 | 264 | IPR007117 | - | |
| Cme11g01184 | 270 | SUPERFAMILY | PHL pollen allergen | 170 | 264 | IPR036749 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme01g00340 | Cme11g01184 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g00032 | Cme-Chr6:232574 | Cme11g01184 | Cme-Chr11:18004777 | 3.13E-68 | dispersed | |
| Cme11g01184 | Cme-Chr11:18004777 | Cme06g02122 | Cme-Chr6:26871468 | 5.23E-30 | dispersed | |
| Cme01g00340 | Cme-Chr1:2543498 | Cme11g01184 | Cme-Chr11:18004777 | 1.05E-136 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g01184 | K20628 | - | csv:101202998 | 492.656 |