Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01211 ATGGGCTGCATCTGTTCTAAGGTTTTAGCTGACGAGTGTAGTGATAATGAGCATGATGGCTCCGAAAGACCCCATTCCTCTATTAAACACCTCTCTGAATTGAAAATACCAAGAGCTGGTTCTCCCAATTCTTCTCAGATTTGGGAGAAGGATAGACTGGATTGTAGTGATGTTACGGTTATGTTGTTCGATACGAAGCCAAACGGTTCTCTACGTTCATACAAGCAACCTCCTAATGAGAAGAAGAAGACAGATTTCCTTAATGTCACCATTATCGACCATCCACGTATCAGAAAGATTCCAAACTCTATCGAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTTGTGGCTTGTGAAGCTATCAAAGACTGGTTGCCAAAACGTGCCAGTAACTTCGTCAAGTTAGAGAAAATTGGCCAAGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATTATTCAAGATAAAGTTGTGGCTTTGAAAAGGATCAGATTTGACAATCAAGATGCTAAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCTTGTACCATGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGACTCACATCACGGCCTGGTGCATCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCATTGTCACAGTAACGGGGTTCTACATAGAGACATCAAGGGCTCAAATCTTCTTATTGACAATAATGGCATTTTGAAGATAGCAGATTTTGGGTTGGCTGTTTTCTTTGATTCACATTCAACAGTTCCGATGACAAGCCGTGTAATAACTCTCTGGTATCGACCACCAGAACTTTTACTTGGAGCGTCTAAATATGGCGTGGAAGTTGATTTGTGGAGTGCTGGTTGCATTCTAGGAGAGTTATATAGTGGCAAACCCATCTTGCCTGGAAAAACAGAGGTTGAACAACTACATAAAATATATAAGCTATGTGGTTCTCCTTCCAAGGACTATTGGAAAAAATTGCATTTGAAGCAGTCAACAAGCATGAAACCTCCACCGTCATACGAAAGATGTCTTCGAGAAAGATATAACGATATTCCTCATAGCGCTGTCGATCTTATGGACACTTTGTTATCTATAGATCCTGCAGGGCGAGGAACTGCAGCTTCCGCTCTCGGCAGTGAGTTCTTTACCACAAGGCCCTTACCAAGTGATCCTTCAAGCTTGCCAAAATACCCTCCAAGCAAAGAGATCAATACAAAACTGCGTGAAGAAGAAGCAAGGAGGCAACAAGGAGTAGGTGGTGAGAGAAGCCAAATAGTCTACCAAGAAGTAAAAGGATTGAAGCAATCTAGAGTTGTTCCTGCTGCAAAGACTAATGCTGAATTGAGAAAACAAAGTCGTTGGACTGCAAAATACCGGAACGAAACGTGTTCCTACGATTTGGTATCTAAGAGAAACTCAAACTCAGGACCTATAATGACTCAGAGACCAAGACATACAAACTCGAAAAAGGAACCGAAAAATACTTCAATTTCGAGTGAGTGTTTAACATCATCTGGTCCAATGGAATTTGTTTCTTATAAATGCATAAGGGAAAGATCAAAAGGAGTTTCAAGGCCGGAATCAATGAGGGAAGACAAAAGTCTTCCTCCTCTATCCAGTTGTAGTGAAGTGTGA 1749 41.51 MGCICSKVLADECSDNEHDGSERPHSSIKHLSELKIPRAGSPNSSQIWEKDRLDCSDVTVMLFDTKPNGSLRSYKQPPNEKKKTDFLNVTIIDHPRIRKIPNSIEAEQVAAGWPSWLAVVACEAIKDWLPKRASNFVKLEKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAKSIKFMAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLTSRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSHSTVPMTSRVITLWYRPPELLLGASKYGVEVDLWSAGCILGELYSGKPILPGKTEVEQLHKIYKLCGSPSKDYWKKLHLKQSTSMKPPPSYERCLRERYNDIPHSAVDLMDTLLSIDPAGRGTAASALGSEFFTTRPLPSDPSSLPKYPPSKEINTKLREEEARRQQGVGGERSQIVYQEVKGLKQSRVVPAAKTNAELRKQSRWTAKYRNETCSYDLVSKRNSNSGPIMTQRPRHTNSKKEPKNTSISSECLTSSGPMEFVSYKCIRERSKGVSRPESMREDKSLPPLSSCSEV 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18333750 18337342 + MELO3C013624.2.1 Cme11g01211 341874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01211 582 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Cme11g01211 582 CDD STKc_CDK9_like 136 420 - -
Cme11g01211 582 MobiDBLite consensus disorder prediction 14 32 - -
Cme11g01211 582 MobiDBLite consensus disorder prediction 506 540 - -
Cme11g01211 582 MobiDBLite consensus disorder prediction 14 45 - -
Cme11g01211 582 MobiDBLite consensus disorder prediction 557 582 - -
Cme11g01211 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Cme11g01211 582 PANTHER CELL DIVISION PROTEIN KINASE 73 538 - -
Cme11g01211 582 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Cme11g01211 582 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Cme11g01211 582 MobiDBLite consensus disorder prediction 420 439 - -
Cme11g01211 582 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01211 582 MobiDBLite consensus disorder prediction 506 521 - -
Cme11g01211 582 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 73 538 - -
Cme11g01211 582 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01211 582 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01211 582 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01211 Cme-Chr11:18333750 Cme06g00688 Cme-Chr6:4487424 0 dispersed
Cme11g01211 Cme-Chr11:18333750 Cme11g01212 Cme-Chr11:18344453 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65243 PF00069 Pkinase 6.00E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01211 - - csv:101207580 1084.32