Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01212 ATGGGTTGTCAATGTTCCAAGCCTTCTGTTGATGAAGATGGCAAAAACAGAGCGACTGAGAAATTTCCTTCACGAAAGGCTTCACGAGTTAATTTATTAAGAAAAGGAGATGATTTGGGATTGAATTCTTTGAAAAGAGATGAAGATGTTCGAATAAATTCCTCACAGAGATCAGATAGTATTCGATCAAAGGTGAAAACAGATGGAGGTGACATTAAACTTGCTTATTTGGATAAGAGGGTCAACGGCTCTAACAGAGTACACGATGATCAAATTGAGAAAAAGAAGAGGGAGAGGTTGGAAGTTGCCATTTCTGTTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCTATGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCACTGTGGCCGGTGAGGCGCTTGAGGGATGGCTGCCACGGAAAGCTGAAACTTTCGAGAAACTTGACAAGATAGGACAGGGCACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCACAATAAACTAGTCGCTCTAAAACGAGTTCGATTTGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACAGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGACCTTACTGGGCTCGCATCTCGGCCTGGTGTCAAGTTCAGTGAACCACAGGTCAAATGCTATATGCAACAACTTCTAAGGGGACTTGATTATTGCCACAGTCATGGTGTCCTCCACCGTGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGGATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCCTTTTGACCCGCATAATCAAGTTCCCTTAACAAGTCGTGTAGTGACTCTATGGTACCGACCACCAGAACTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTGTGGAGTACGGGCTGCATACTAGCTGAGCTATATGCTGGGAAACCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGTTCACCGCCGGAGAATTATTGGAAGAAATTGCAGTTACCTCATTCAACTGGGTTCAAGACAGCTCAGCCATACCGACGTTGTATTGGGGAAATGTTGAAGGACTTCCCATCTTCTGTGGTGGCTCTTGTGGATAAGTTGCTTTCCATAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGCGAGTTCTTTACAACTAAACCACTTGCATGCGAGCCTACAAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCAAAGTTCCACAGCTGCAGAAGGCAGTCGAGAGTTGAGGGCAAAGACCCTAAAGATTATGGGGAAGGGAGGCGACCAAAAGAAGCTCACCTTAATCTTTCTCTGAATGCTAAGGATGAAATAAACATGATGCAGAAAAGGCAAGGCCATTCAAGTTTAAAGGGCCGGAGTGGTGTGTTGTATCCTCGTGGGGATGAAACAGTTTCTGGTTTATTGAATGCTCCGCCCAAACAATCTGCCACAGAAATTTGCTCAAATACAGGCAGGATTTCACATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGAAAGCAACTCGATGACCATTCGATGGCACTTGACGGATCCAATCTCTCAGTATTATCTCGTTTAGTAGCAACGAGGTCTAATATATCTGATCATCCCCATGATAGACCAGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTCGTTAGGGATTCAGAGTCAACGAGAAAGCAGGACCGGATATTTTATACACACCGAGTTGCAGATTCATATCGAGTAGAGAATGAAAAGGCATGTGCTAAAGAACAGTCCCTGCTTGCTTATGGGACAGACATGAATAAGCTTTATACTTCTGGCCCAATCCTTGGTCCATCAAACAACTTGGATAGAATTCTAAAAGAACGAGACCGTCAGATTCAAGAATATGCTCGACAAGCACGACACAGTAAAGCTGGTGACAATCAGTCAAAGGGTTCAAGAGCAACAACTGGAAAACATCTGATGTTGAGCCATGGAATGTGA 2151 43.79 MGCQCSKPSVDEDGKNRATEKFPSRKASRVNLLRKGDDLGLNSLKRDEDVRINSSQRSDSIRSKVKTDGGDIKLAYLDKRVNGSNRVHDDQIEKKKRERLEVAISVNYPGKGSIPKAMEAEQVAAGWPSWLSTVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSQRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSHGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPSSVVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFHSCRRQSRVEGKDPKDYGEGRRPKEAHLNLSLNAKDEINMMQKRQGHSSLKGRSGVLYPRGDETVSGLLNAPPKQSATEICSNTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDHPHDRPGPSRSEVGRLPDFVRDSESTRKQDRIFYTHRVADSYRVENEKACAKEQSLLAYGTDMNKLYTSGPILGPSNNLDRILKERDRQIQEYARQARHSKAGDNQSKGSRATTGKHLMLSHGM 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18344453 18348344 + MELO3C013625.2.1 Cme11g01212 341875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01212 716 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01212 716 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Cme11g01212 716 Gene3D Transferase(Phosphotransferase) domain 1 233 472 - -
Cme11g01212 716 MobiDBLite consensus disorder prediction 459 482 - -
Cme11g01212 716 MobiDBLite consensus disorder prediction 589 619 - -
Cme11g01212 716 MobiDBLite consensus disorder prediction 10 24 - -
Cme11g01212 716 CDD STKc_CDK9_like 150 434 - -
Cme11g01212 716 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Cme11g01212 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Cme11g01212 716 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Cme11g01212 716 SMART serkin_6 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01212 716 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 87 684 - -
Cme11g01212 716 PANTHER CELL DIVISION PROTEIN KINASE 87 684 - -
Cme11g01212 716 MobiDBLite consensus disorder prediction 588 619 - -
Cme11g01212 716 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01212 716 MobiDBLite consensus disorder prediction 687 716 - -
Cme11g01212 716 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01212 - - - cmo:103490535 1439.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01197 Cme-Chr6:9416222 Cme11g01212 Cme-Chr11:18344453 0 dispersed
Cme11g01212 Cme-Chr11:18344453 Cme12g01566 Cme-Chr12:23051938 0 dispersed
Cme11g01211 Cme-Chr11:18333750 Cme11g01212 Cme-Chr11:18344453 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00140 . 1 294 Core Cell Cycle Gene Families AT3G48750 86.1 2.0e-151 531.9
Cme08g02049 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 7.0e-96 347.4
Cme08g02049 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 1.3e-153 539.3
Cme07g00023 . 11 332 Core Cell Cycle Gene Families AT3G54180 61.7 7.9e-114 407.1
Cme10g00140 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 2.2e-92 335.9
Cme08g02049 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 3.4e-123 438.0
Cme07g00023 . 11 332 Core Cell Cycle Gene Families AT2G38620 53.1 1.2e-88 323.2
Cme07g00023 . 1 330 Core Cell Cycle Gene Families AT1G76540 78.8 3.3e-152 534.6
Cme08g02049 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 5.3e-118 421.0
Cme10g00140 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.2e-93 340.1
Cme07g00023 . 8 330 Core Cell Cycle Gene Families AT1G20930 82.7 1.1e-155 546.2
Cme08g02049 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 2.0e-120 429.1
Cme10g00140 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.2e-97 351.3
Cme05g00041 . 1 514 Core Cell Cycle Gene Families AT5G10270 74.3 1.5e-215 745.7
Cme04g01874 . 1 427 Core Cell Cycle Gene Families AT5G10270 79.9 1.7e-203 705.7
Cme02g00153 CCT,ECH 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 7.6e-98 354.8
Cme06g01197 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.2e-97 353.2
Cme12g01566 . 88 404 Core Cell Cycle Gene Families AT5G10270 53.2 1.1e-96 350.9
Cme09g00045 . 137 453 Core Cell Cycle Gene Families AT5G10270 52.4 9.2e-96 347.8
Cme06g00688 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.3 1.2e-95 347.4
Cme10g01289 . 147 463 Core Cell Cycle Gene Families AT5G10270 51.8 7.8e-95 344.7
Cme11g01212 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.0 3.0e-94 342.8
Cme05g01749 CCT,ECH 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 1.1e-93 340.9
Cme12g01970 . 120 438 Core Cell Cycle Gene Families AT5G10270 50.7 1.1e-91 334.3
Cme11g01211 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.3 2.0e-90 330.1
Cme05g00041 . 65 513 Core Cell Cycle Gene Families AT5G64960 71.9 8.8e-178 620.2
Cme04g01874 . 65 427 Core Cell Cycle Gene Families AT5G64960 76.8 3.0e-162 568.5
Cme06g01197 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.0e-81 300.1
Cme12g01566 . 142 404 Core Cell Cycle Gene Families AT5G64960 52.9 4.5e-81 298.9
Cme02g00153 CCT,ECH 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 5.9e-81 298.5
Cme11g01212 . 196 458 Core Cell Cycle Gene Families AT5G64960 52.9 1.7e-80 297.0
Cme10g01289 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.5 1.9e-79 293.5
Cme11g01211 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 1.9e-79 293.5
Cme09g00045 . 191 453 Core Cell Cycle Gene Families AT5G64960 52.5 5.5e-79 292.0
Cme06g00688 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.1 1.2e-78 290.8
Cme02g01701 . 4 416 Core Cell Cycle Gene Families AT1G73690 73.6 8.7e-174 606.7
Cme02g01701 . 12 344 Core Cell Cycle Gene Families AT1G66750 77.2 2.3e-154 542.0
Cme02g01701 . 8 417 Core Cell Cycle Gene Families AT1G18040 74.4 2.5e-173 605.1
Cme08g01743 . 1 392 Core Cell Cycle Gene Families AT5G63610 77.7 1.3e-173 606.3
Cme05g01984 . 1 308 Core Cell Cycle Gene Families AT4G28980 56.3 9.7e-95 344.4
Cme03g00509 . 5 513 Core Cell Cycle Gene Families AT1G44110 54.8 4.9e-136 481.5
Cme01g02653 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.7e-88 323.6
Cme04g00381 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.4 5.1e-85 312.0
Cme07g00308 . 95 374 Core Cell Cycle Gene Families AT1G44110 51.1 1.7e-80 297.0
Cme03g02080 . 90 373 Core Cell Cycle Gene Families AT1G44110 50.7 1.6e-78 290.4
Cme01g02653 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 2.2e-77 286.6
Cme04g00381 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 2.1e-75 280.0
Cme07g00308 . 100 372 Core Cell Cycle Gene Families AT1G77390 50.5 7.4e-73 271.6
Cme03g01666 . 204 457 Core Cell Cycle Gene Families AT1G77390 50.4 1.0e-66 251.1
Cme04g00381 . 7 484 Core Cell Cycle Gene Families AT5G25380 53.5 4.9e-117 418.3
Cme07g00308 . 99 367 Core Cell Cycle Gene Families AT5G25380 50.6 8.7e-74 274.6
Cme03g00509 . 238 506 Core Cell Cycle Gene Families AT5G25380 51.4 2.2e-72 270.0
Cme01g00101 . 120 343 Core Cell Cycle Gene Families AT5G25380 52.0 1.2e-59 227.6
Cme04g00381 . 3 422 Core Cell Cycle Gene Families AT5G11300 51.5 3.2e-94 342.4
Cme03g00509 . 229 450 Core Cell Cycle Gene Families AT5G11300 51.7 1.9e-62 236.9
Cme07g00308 . 95 311 Core Cell Cycle Gene Families AT5G11300 54.4 7.9e-61 231.5
Cme03g02080 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.0e-60 229.6
Cme01g00101 . 120 285 Core Cell Cycle Gene Families AT5G11300 51.5 2.4e-41 166.8
Cme01g02653 . 157 503 Core Cell Cycle Gene Families AT1G15570 60.9 2.6e-118 422.5
Cme03g00509 . 239 510 Core Cell Cycle Gene Families AT1G15570 51.6 8.3e-72 268.1
Cme01g02653 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.2 6.4e-120 427.9
Cme07g00308 . 95 372 Core Cell Cycle Gene Families AT1G80370 50.4 4.4e-76 282.3
Cme03g02080 . 98 370 Core Cell Cycle Gene Families AT1G80370 52.7 2.2e-75 280.0
Cme03g00509 . 239 511 Core Cell Cycle Gene Families AT1G80370 52.4 2.0e-73 273.5
Cme03g02080 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.0 3.1e-114 408.7
Cme07g00308 . 1 377 Core Cell Cycle Gene Families AT5G43080 56.3 8.3e-112 400.6
Cme04g00381 . 208 484 Core Cell Cycle Gene Families AT5G43080 53.2 5.5e-79 291.6
Cme03g02080 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.9 5.4e-125 444.5
Cme07g00308 . 1 377 Core Cell Cycle Gene Families AT1G47210 54.9 1.8e-112 402.9
Cme04g00381 . 208 474 Core Cell Cycle Gene Families AT1G47210 52.8 1.6e-76 283.5
Cme01g02653 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 2.1e-76 283.1
Cme03g02080 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 9.6e-94 340.5
Cme07g00308 . 95 375 Core Cell Cycle Gene Families AT1G47220 58.7 2.8e-93 339.0
Cme04g00381 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 2.3e-71 266.2
Cme03g02080 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.9 4.1e-117 418.3
Cme07g00308 . 1 377 Core Cell Cycle Gene Families AT1G47230 57.4 5.0e-115 411.4
Cme01g02653 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.6e-73 273.5
Cme04g00381 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.3e-72 269.6
Cme08g01425 . 1 449 Core Cell Cycle Gene Families AT4G37490 54.1 1.3e-114 410.2
Cme08g01425 . 1 342 Core Cell Cycle Gene Families AT5G06150 52.2 3.9e-82 302.0
Cme08g01425 . 1 406 Core Cell Cycle Gene Families AT3G11520 56.9 2.1e-108 389.4
Cme08g00990 . 115 341 Core Cell Cycle Gene Families AT3G11520 51.5 5.6e-61 231.9
Cme05g00225 . 14 307 Core Cell Cycle Gene Families AT2G26760 50.7 1.9e-72 270.0
Cme08g00990 . 12 384 Core Cell Cycle Gene Families AT2G17620 62.7 3.0e-119 425.6
Cme07g00058 . 37 450 Core Cell Cycle Gene Families AT2G17620 50.4 1.9e-102 369.8
Cme05g00225 . 139 300 Core Cell Cycle Gene Families AT2G17620 54.0 2.1e-40 163.7
Cme08g00990 . 11 341 Core Cell Cycle Gene Families AT4G35620 59.4 6.5e-94 341.3
Cme07g00058 . 30 405 Core Cell Cycle Gene Families AT4G35620 50.1 7.2e-85 311.2
Cme05g00225 . 139 300 Core Cell Cycle Gene Families AT4G35620 56.4 3.4e-42 169.5
Cme07g00058 . 1 448 Core Cell Cycle Gene Families AT1G20610 62.5 7.3e-142 500.7
Cme08g00990 . 15 384 Core Cell Cycle Gene Families AT1G20610 61.0 6.4e-114 407.9
Cme05g00225 . 139 300 Core Cell Cycle Gene Families AT1G20610 55.2 7.7e-43 171.8
Cme07g00058 . 1 345 Core Cell Cycle Gene Families AT1G76310 61.4 9.9e-102 367.1
Cme08g00990 . 11 280 Core Cell Cycle Gene Families AT1G76310 57.2 9.7e-73 270.8
Cme05g00225 . 135 306 Core Cell Cycle Gene Families AT1G76310 54.0 3.0e-42 169.5
Cme08g01425 . 177 343 Core Cell Cycle Gene Families AT1G76310 51.5 5.7e-41 165.2
Cme01g01500 . 179 632 Core Cell Cycle Gene Families AT1G16330 52.7 3.9e-115 412.5
Cme09g00668 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.5 1.7e-109 392.9
Cme10g00495 . 1 385 Core Cell Cycle Gene Families AT1G70210 53.5 1.7e-93 339.7
Cme08g00737 . 43 320 Core Cell Cycle Gene Families AT2G22490 55.2 5.1e-80 295.0
Cme03g02070 . 52 329 Core Cell Cycle Gene Families AT4G34160 50.3 1.4e-67 253.8
Cme03g02070 . 57 332 Core Cell Cycle Gene Families AT5G67260 50.4 5.9e-69 258.5
Cme08g00737 . 48 271 Core Cell Cycle Gene Families AT5G65420 58.1 6.8e-69 257.7
Cme03g01823 . 63 262 Core Cell Cycle Gene Families AT5G65420 56.9 8.0e-62 234.2
Cme08g00737 . 53 229 Core Cell Cycle Gene Families AT5G10440 59.3 3.5e-55 211.8
Cme03g01823 . 58 236 Core Cell Cycle Gene Families AT5G10440 53.9 6.8e-51 197.6
Cme08g00534 . 1 277 Core Cell Cycle Gene Families AT5G27620 66.1 1.9e-101 365.9
Cme11g01851 . 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 1.7e-42 168.3
Cme12g00492 . 1 96 Core Cell Cycle Gene Families AT2G27960 81.3 1.6e-40 161.8
Cme11g01851 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.8e-39 157.1
Cme10g00004 . 6 1024 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1406.3
Cme01g02346 . 2 489 Core Cell Cycle Gene Families AT1G02970 58.8 8.7e-155 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007136 1 2 1 2 1 1 1 1 1 2 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 2 0 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65244 PF00069 Pkinase 5.40E-68 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01212 Cme_Chr11 FPKM 0.071098 0.016014 0.009307 0.0 0.022504 0.0 0.0 0.0 0.015009 0.044277