Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01221 ATGGGTTGCGCCACTTCTAAGCTCGACCATCTTCCTGCGGTTTCCCTATGTCGGGAGCGTTGCGCTTTTCTTAACGAAGCCATTCAGCATCGACACACGTTCGCTCAAGCTCACACCGCCTATATTCTCTCTCTTCAGGGTGTTGGCAAATCTTTGCACAATTTTATTGAACCAGGTTATGTTTATTCTGACCCTTCTTCTTCTCCTAAGCTCAAGGTTCCTCCTCAGAGAAAGAGCGACCTTGACCTTGACCCTTCTAATTCTCCTCTCCATCGTTTATCTCACTCCAATTCCGGTTCACATCTCCATCTACACTCCGATTCCGACGATGATTCCAGTTCCCTTCACCATTCCGATCACTCTTCGCCTTTGCATCCCACCCACGACGATTTTTTTGACTACCCAGATGGGAATCGCGGTGGTGGTGGTTATGTACAGATGAATTATATGAAGAACAATTCGGTGCCGTCGGTGGTGCATCAGCAGATGCCAATTACTTCAGAGAGGGTATATCATATGGGTGAATCTTCTTCTTCTGGTTATTATCCTTCTTACCCTTATTCGAATAATGGGTATTCCAATTATGGCGGTGGGTATGGGGGTGGTTATTATGGTTCTTCACCGCCTTCCGCTTACGGGGGTATTTCTAATATGTTACCTTCGCCTTCGTCGTCGAAGCCGCCACCGCCTCCTCCCTCTCCTCCGAGAGTCTCTACTTGGGATTTTCTTAACTTCTTTGAGACTCCGGCGGTGGTGAATTACTATGGTTCCTACACGCCAAGCAGGGATCCCAGAGAAGTGAGAGCGGAAGAGGGAATTCCTGAATTAGAAGATGTACGATATCACCAACCCGAGGTTGTGAAGAAGGTTAATGGTGAACAGAAGTTCATCGAGGACGGCGGCGAGAAGCACTTAAAGGCGATGGTGGACGACCAATTGAAGCTAATAAACAAGAACGTCGCCGCTCCCCCTTATCAGATGAAGCCCAACGCTGCAATTGATGAATTTAAGAAGGTTGTAGATAAGGATAAGAAGCTGGAGGATCATGGAAATGGAGCTCCTGCTATTGGTGCAACAATGAAAGGAGGAGGGGGAGGTACTTCAAGGGACATTTATAAGGCGGCTAGAGAAATTGAAGTTTTGTTCAAGAAAGCCTCAGAGTTTGGAGATGAAATTGCCAAGATGTTGGAGATGGGGCAACTTCCTCATCAGCGAAAACATGCATTTTTGGCTCGACCGCCTGCTACACGGAGGAGGGTGAAGTCCTCTTCTAAAGCTGGTGCTGCTGAAGTCGTTTTTGTTGAGGATATGGGAATGAAATCTGGAAATCTTTCATCTACCTTGAAGAAGTTATACATGTGGGAAAAGAAACTTTATAATGAGGTGAAGACAGAGGAAAAGATGCGGATGACCCATGACAGGAAGCGCCACCAACTCAAACGTTTGCATGAGAGAGGTGCTGAGGCCCAGAAAATTGAGGCAACTCAAACGTCCATAAATACCTTGTCGACAAACTTAAAAATTGCAATTCAGGTTGTTGACAAGATTTCAGAGACAATAAATAAGATTAGGGATGAAGAGCTTTGGCCACAAGTGAGTGAACTGATTCAAGGGTTAACCAGGATGTGGAAAGGTATGTTGGAATGTCACCACGATCAGTTTCAAGTGATTAAAGAATCGTGTGATATAGGCCATACTAGATCTTGTGGAAATCCTAGTGATATGGATCTTCGAGTGACTTTACAACTTGATCACGAGCTTATTAGCTGGACAACTTGTTTCTCCGGTTGGATAAGTGCCCAGAAAAATTTTGTAAGATCGTTGAATAATTGGCTTCTGAAATGTCTTCTGTATGAGCCTGAAGAAACAGCTGATGGAATTGTTCCTTTCTCACCTAGTAGAATTGGTGCGCCACCCATTTTTGTAATCTGCAATCAGTGGTCACAAGGTCTAGATAGATTCTCTGAGAAGAAGGTAGTTGATTCTATACACGTAGCCGCTAAAAGCGTGCTTCAAATATTGGAGCGTGATAAGCAAGAAGTGCGGCATACAACGATAACAAACAAGGATCTCGAAAAGAAAGTGAAAAAATTTGATAGGGAAGACCAAAAGTTGCAGAAAAAAATTCAGGCATTAGACAAGAAACTGATTCTGGTAACTGGAGATGACACTAGCAATAGCAGCACCCTGCAGGCAGGTCTGCAATCCATTTTCGAGGCCCTTGAAAGCTTTGCATCTGACTCCATGAAAGCATACGAAGAGCTTTTGCAACGAAGCGCTGAAGAAATTGCCAAGGCAAGAGCATGA 2307 44.65 MGCATSKLDHLPAVSLCRERCAFLNEAIQHRHTFAQAHTAYILSLQGVGKSLHNFIEPGYVYSDPSSSPKLKVPPQRKSDLDLDPSNSPLHRLSHSNSGSHLHLHSDSDDDSSSLHHSDHSSPLHPTHDDFFDYPDGNRGGGGYVQMNYMKNNSVPSVVHQQMPITSERVYHMGESSSSGYYPSYPYSNNGYSNYGGGYGGGYYGSSPPSAYGGISNMLPSPSSSKPPPPPPSPPRVSTWDFLNFFETPAVVNYYGSYTPSRDPREVRAEEGIPELEDVRYHQPEVVKKVNGEQKFIEDGGEKHLKAMVDDQLKLINKNVAAPPYQMKPNAAIDEFKKVVDKDKKLEDHGNGAPAIGATMKGGGGGTSRDIYKAAREIEVLFKKASEFGDEIAKMLEMGQLPHQRKHAFLARPPATRRRVKSSSKAGAAEVVFVEDMGMKSGNLSSTLKKLYMWEKKLYNEVKTEEKMRMTHDRKRHQLKRLHERGAEAQKIEATQTSINTLSTNLKIAIQVVDKISETINKIRDEELWPQVSELIQGLTRMWKGMLECHHDQFQVIKESCDIGHTRSCGNPSDMDLRVTLQLDHELISWTTCFSGWISAQKNFVRSLNNWLLKCLLYEPEETADGIVPFSPSRIGAPPIFVICNQWSQGLDRFSEKKVVDSIHVAAKSVLQILERDKQEVRHTTITNKDLEKKVKKFDREDQKLQKKIQALDKKLILVTGDDTSNSSTLQAGLQSIFEALESFASDSMKAYEELLQRSAEEIAKARA 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18516464 18521133 + MELO3C013634.2.1 Cme11g01221 341884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01221 768 MobiDBLite consensus disorder prediction 102 135 - -
Cme11g01221 768 MobiDBLite consensus disorder prediction 215 236 - -
Cme11g01221 768 MobiDBLite consensus disorder prediction 222 236 - -
Cme11g01221 768 Pfam Protein of unknown function (DUF632) 373 670 IPR006867 -
Cme11g01221 768 Coils Coil 749 768 - -
Cme11g01221 768 Pfam Protein of unknown function (DUF630) 1 57 IPR006868 -
Cme11g01221 768 PANTHER RNA POLYMERASE SUBUNIT BETA, PUTATIVE (DUF630 AND DUF632)-RELATED 1 764 - -
Cme11g01221 768 MobiDBLite consensus disorder prediction 63 137 - -
Cme11g01221 768 Coils Coil 674 715 - -
Cme11g01221 768 PANTHER UNCHARACTERIZED 1 764 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01221 - - - csv:101209035 1316.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01160 Cme-Chr1:14895784 Cme11g01221 Cme-Chr11:18516464 0 dispersed
Cme03g01356 Cme-Chr3:23076228 Cme11g01221 Cme-Chr11:18516464 1.10E-11 dispersed
Cme07g00836 Cme-Chr7:8093658 Cme11g01221 Cme-Chr11:18516464 1.29E-09 dispersed
Cme11g00366 Cme-Chr11:3718481 Cme11g01221 Cme-Chr11:18516464 3.62E-50 dispersed
Cme11g01221 Cme-Chr11:18516464 Cme08g00949 Cme-Chr8:6234042 2.42E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00823 . . . Blo04g00600 . . . . . . . Sed01g0639 . . . . . . . . Bhi10g01233 Tan05g1068 Cmetu11g1383 . Hepe08g0331 . . . . . . . . . . . . Cme11g01221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013043 0 1 0 0 0 1 2 1 1 1 0 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01221 Cme_Chr11 FPKM 31.501568 34.499786 23.179613 25.370796 18.473249 18.079363 20.137674 29.341652 26.195381 28.373699