Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01222 AAGAACACACCTTCTCTCTCTTTAATTACCAAAAAACCAAAAAAAAGAAAAAAAAAAAAAAAAAAACGTCACTGTGTCAAATTCCAAGCAAGACAAAGAGAGAGAGTAAAAAGTGGTTTTTCTCACTCATCTCTTTGTATTCCTTTTCTTGCATACCTTCAAAAGTTGCTTCCCCAACTAATATTCTTCTCTTTCTTTCCCCCGTTCTCTCTATGCTTCACTTTCCCCTTTCCTCTATCTGAGTTTTCAAAAGGTTGTCACAAATTTTTTCTTATGGGGTGTTGTGAATCCACTTTTCTGACAGAAACCCATCCCGAAAAGCTCCAATCCCAGCAGCCTGCACCTCCGTATGTTGCGGTGGAGCCTCCGCCGCCGCTGCCGCCTGCTGTTGGACCTGAACCGACGCAGCTCGGGGAAATGGTTTCCACTTTCTCTGAGTTCTCCTTCTCCGACCTTAAGGCGGCTACCGACAATTTCAACTCCAACTTCATAGTCTCAGAGAGCGGCGAGAAGGCTCCCAACATTGTGTACAAGGGTCGACTTCATAACCGCAAGTGGATCGCTGTTAAGAAGTTTACGAAGGTGGCTTGGCCGGATGCCAAACAATTTGTGGAAGAGGCTTCGGGAGTTGGGAAGCTACGGCATCCAAGGTTTGCGAATTTGATTGGGTATTGCTGCGATGGTGATGAGAGGCTGCTTGTTGCGGAGTACATGCCTAATGATACTCTTGCAAAGCATTTATTCCACTATTGTTTCATCTATGGGGAAAATCAAACCATTGAGTGGGCCATGCGGTTGAGAGTTGCTTACTACATTGCTGAAGCCTTGGAATATTGTACCACAAAAGGTCGTGCATTGTACCATGACTTGAATGCATATAGAGTTCTTTTTGATGAGGGTGGCGATCCACGTCTTTCATGTTTTGGGTTGATGAAAAACAGTCGGGATGGTAAGAGTTACAGCACAAATCTGGCCTACACACCACCTGAGTATTTGAAAAATGGAAGGGTAACCCCTGAAAGTGTTATTTATAGCTTTGGTACTGTCCTCTTGGATCTTCTGAGTGGCAAGCACATCCCTCCAAGTCATGCTCTTGATCTGATTCGAGGAAAGAATATCATTCTCTTAATGGATTCGCATTTGGAAGGAAAATTTTCTACAGAAGACGCAACTGTGGTTGTTAATCTTGCTTCTCAATGTTTACAATATGAACCTAGGGACAGGCCTAACACAGAGGAACTTGTTTCAACTCTTGCTCCATTGCAAACAAAAGTAGATACATGTGGGAACACGGTTCCCTCCTATGTTATGCTTGGAATGAAGAAGCAGGAGGATGCCCCAGCAGCCCCTGTAGCCCCTGTAGCTCCAGCAGCCACTGTAGCTCCACAACGCCCTTTATCGTCGATGGGTGAGGCCTGTTCGAGGATGGATCTCACTGCAATTCATCAAATCTTGGTTATGACACACTACAGAGATGATGAAGGAACTAATGAGCTATCTTTTCAAGAGTGGACACAACAGATGAGAGATATGCTGGAAGCAAGAAAGCGTGGGGATTTTGCCTTTCGGGACAAAAATTTTAAAGCTGCAATCGACTGCTATTCACAGTTCATAGATGTAGGAACTATGGTTTCCCCAACCGTGTTTGCTCGACGAAGCCTATGCCATTTGTTGTGTGATCAACCCGATGCAGCACTTCGGGATGCAATGCAAGCACAATGCGTACACCCAGACTGGCCCACAGCCTTCTACATGCAATCGGTTGCCCTTGCAAAGCTGGATATGCAGAAAGACGCAATTGACATGTTGAACGAAGCAGCTGCATTAGAAGAGAAGAGGCAACGAGGTGGACGATGA 1857 45.13 KNTPSLSLITKKPKKRKKKKKKRHCVKFQARQRERVKSGFSHSSLCIPFLAYLQKLLPQLIFFSFFPPFSLCFTFPFPLSEFSKGCHKFFLMGCCESTFLTETHPEKLQSQQPAPPYVAVEPPPPLPPAVGPEPTQLGEMVSTFSEFSFSDLKAATDNFNSNFIVSESGEKAPNIVYKGRLHNRKWIAVKKFTKVAWPDAKQFVEEASGVGKLRHPRFANLIGYCCDGDERLLVAEYMPNDTLAKHLFHYCFIYGENQTIEWAMRLRVAYYIAEALEYCTTKGRALYHDLNAYRVLFDEGGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLKNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDLIRGKNIILLMDSHLEGKFSTEDATVVVNLASQCLQYEPRDRPNTEELVSTLAPLQTKVDTCGNTVPSYVMLGMKKQEDAPAAPVAPVAPAATVAPQRPLSSMGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMRDMLEARKRGDFAFRDKNFKAAIDCYSQFIDVGTMVSPTVFARRSLCHLLCDQPDAALRDAMQAQCVHPDWPTAFYMQSVALAKLDMQKDAIDMLNEAAALEEKRQRGGR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18583545 18589583 + MELO3C013635.2.1 Cme11g01222 341885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01222 618 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 92 618 IPR045845 GO:0004672|GO:0009742
Cme11g01222 618 Gene3D Phosphorylase Kinase; domain 1 135 237 - -
Cme11g01222 618 Gene3D Tetratricopeptide repeat domain 509 616 IPR011990 GO:0005515
Cme11g01222 618 MobiDBLite consensus disorder prediction 1 22 - -
Cme11g01222 618 Coils Coil 592 612 - -
Cme11g01222 618 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED 92 618 - -
Cme11g01222 618 ProSiteProfiles Protein kinase domain profile. 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01222 618 Pfam Protein tyrosine and serine/threonine kinase 176 418 IPR001245 GO:0004672|GO:0006468
Cme11g01222 618 SUPERFAMILY Protein kinase-like (PK-like) 140 423 IPR011009 -
Cme11g01222 618 SUPERFAMILY TPR-like 514 611 IPR011990 GO:0005515
Cme11g01222 618 Gene3D Transferase(Phosphotransferase) domain 1 239 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01222 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - csv:101205895 954.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00068 Cme-Chr7:433822 Cme11g01222 Cme-Chr11:18583545 0 dispersed
Cme08g01441 Cme-Chr8:12942811 Cme11g01222 Cme-Chr11:18583545 1.38E-12 dispersed
Cme08g02486 Cme-Chr8:31757117 Cme11g01222 Cme-Chr11:18583545 0 dispersed
Cme11g01222 Cme-Chr11:18583545 Cme11g01346 Cme-Chr11:20315524 0 dispersed
Cme12g00401 Cme-Chr12:5809054 Cme11g01222 Cme-Chr11:18583545 2.17E-23 dispersed
Cme11g01222 Cme-Chr11:18583545 Cme03g01357 Cme-Chr3:23084162 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g243 . . . . Bpe07g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1227 . Lsi10g00824 . . . . . . . . . . . . . . . . . . . . Bhi10g01232 . . . . . . . . . . . . . . . . Cme11g01222
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000526 3 6 2 3 3 3 6 3 3 3 3 3 6 3 3 6 3 5 6 3 3 3 3 3 2 3 3 6 5 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65245 PF07714 PK_Tyr_Ser-Thr 1.30E-25 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01222 Cme_Chr11 FPKM 42.749176 43.472729 37.301804 36.764626 35.361961 36.100334 37.066849 26.713448 27.525101 30.097012