Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01236 ATGCTTGGAAACTTCAGTTTTGGTGATTACTTCAAGAAAGAAGCAATTAAGTGGGCATGGGAGCTGACAACCATCGAATTTGGGTTGCCGGCCAACAGACTATGGATTAGTATATATGAAGAAGATGACGAAGCTTTTGCAATATGGCATGACGAGGTAGGTGTTCCTGTTGATCGTATAAAGAGGATGGGTGAGGATGACAACTTTTGGACTAGTGGCATCACGGGCCCATGTGGCCCATGTTCTGAGATTTATTATGATTTCCAACCTGAAAAGGGGTATTCTGATGTTGATTTGGGGGACGATACAAGGTTTATGGAGTTCTACAATTTAGTTTTCATGCAATACAACAAAAGGGATGATGGTTCCCTTGAACCTTTGAAACAGAAGAATATAGATACAGGGCTTGGTTTAGAGCGCATGGCTCGTATACTCCAAAAAGTTCCGAACAATTATGAGACAGACTTGATCTACCCCATTATACAGAAGGCCTCAGAACTAGCAAATGTGACATATGACACTGCTGATAATCAATCAAAAACAAACCTTAAGATCATTGGAGACCATATGCGTGCAGTTGTGTACCTGATATCCGATGGAGTTGTCCCATCCAACATTGGCAGAGGATATGTTGTCCGCAGGCTGATCCGAAGAGTTGTTCGTACTGGTAGGCTGCTTGGAATAAAGGGGGATGGAATAGGCAATATTGATCGGGCATTTACACCACTTATTGCAGAAAAGGTCATTGCATTAAGCAACCACATTGACGAGGATGTAAAAGGTAGAGCAGGACGCATTCTCGAGGAGCTGAAAAGGGAAGAACTTAGGTTTGTACAGACACTAGAACGAGGAGAAAAGCTGCTGGAAGAAATGTTAGCTGATGCATTGGCTAGTGCTAAAGAGGGTGGAAGGATTCCTTGTTTGGCTGGCAAGGATGCATTTCTGTTGTATGATACATATGGCTTCCCAGTGGAGATTACCACAGAAGTTGCTCAAGAGCGTGGTGTAGTGGTTGATATGGAGGGTTTTGATATTGAGATGGATAATCAGAGACGGCAATCTCAGGCTGCACATAATGTTGTTAAGCTTGAAGTTGGTGAAGGTGCAGATATAATGGAAACTATCTCTGACACAGAATTTCTTGGATATGATACGCTCTCTGCTAAAGCAATTGTGGAGAGTCTTATTGTGAATGGTAATCCTGTCTTACAGGTATCAGAAGGAAATGATGTAGAAGTTCTGTTGAATAGGACACCTTTCTACGCAGAATCTGGTGGTCAGATAGGAGACCATGGTTTCATCTATATTTCAGAAGGTGAAAACAGTCAGAACGTAGTAGTGGAGGTAAAAGATGTCCAAAAATCTGCGGGCAGCATATTTGTTCACAAGGGTATCATCAAACAGGGAATTCTAGAGGTTGGGAGAGAAGTGGAAGCAGCAGTAGATGCAGAATTGAGGCAAAGAGCCAAGGTTCATCATACTGCTACGCATCTGCTACAGTCTGCACTTAAGAGGACCATAGGCCAAGAAACATCTCAAGCTGGTTCCTTGGTTGCTTTTGACCGGCTTAGATTTGATTTCAACTACCACCGACCTCTTGTTGACGCTGAGATCGTGAAAATTGAGGAACTAATCAACGGTTGGATTGGAGATGCAGTGCTTCTCCAAACTAAAGTTATGCCTCTTACTGAAGCCAAAAAAGCTGGGGCTATTGCTATGTTCGGAGAGAAGTATGGAGAAGAGGTACGTGTTGTTGAGGTTCCTGGTGTATCAATGGAACTTTGTGGTGGGACTCATGTATTCAACACTTCAGAAATACGCGGTTTTAAAATAATCTCAGAGCAAGGCATTGCATCTGGAGTTAGGCGAATAGAGGCTGTGGCTGGTGATGCTTTCATCGAGTACGTTAATACCAGAGACTCCCATATGAAGCGGCTGTGCACCATGCTCAAGGTAAAAGCCGAGGATGTTACGACCCGGGTAGATAATCTTCTTGAGGAATTGCGGATGGCAAGAAATGAAATATCTAATTTGCGTGAAAAAACTGCAGTCTTTAAAGCGTCAAGCATTGCTAATAAGGCATTTCTGGTTGGAACATCAAAAGAGATCAGGGTACTAGTTGAATACATGGATGATACGGACGCAGATTCATTGAAAAGTGCAGCTGAGTTCTTGATAGACAATCTTCAAGATCCAGCAGCTATAGTACTAGGTTCCTGTCCTGGGGAAGGAAAAGTGAGTTTAGTTGCAGCATTTACACCAAGTGTTGTCGATCTGGGAGTACAGGCAGGAAAGTTCATTGGATCCATAGCTAAGTTATGTGGGGGGGGAGGGGGCGGTAGGCCCAATTTTGCTCAGGCAGGCGGAAGAAAACCTGAGAACTTGTTGGATGCACTTGAAAATGCTCGATCAGAGCTCACCCGGATTCTGTCAGAGAAAGCGAGCTAG 2448 43.59 MLGNFSFGDYFKKEAIKWAWELTTIEFGLPANRLWISIYEEDDEAFAIWHDEVGVPVDRIKRMGEDDNFWTSGITGPCGPCSEIYYDFQPEKGYSDVDLGDDTRFMEFYNLVFMQYNKRDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIYPIIQKASELANVTYDTADNQSKTNLKIIGDHMRAVVYLISDGVVPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGIGNIDRAFTPLIAEKVIALSNHIDEDVKGRAGRILEELKREELRFVQTLERGEKLLEEMLADALASAKEGGRIPCLAGKDAFLLYDTYGFPVEITTEVAQERGVVVDMEGFDIEMDNQRRQSQAAHNVVKLEVGEGADIMETISDTEFLGYDTLSAKAIVESLIVNGNPVLQVSEGNDVEVLLNRTPFYAESGGQIGDHGFIYISEGENSQNVVVEVKDVQKSAGSIFVHKGIIKQGILEVGREVEAAVDAELRQRAKVHHTATHLLQSALKRTIGQETSQAGSLVAFDRLRFDFNYHRPLVDAEIVKIEELINGWIGDAVLLQTKVMPLTEAKKAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVFNTSEIRGFKIISEQGIASGVRRIEAVAGDAFIEYVNTRDSHMKRLCTMLKVKAEDVTTRVDNLLEELRMARNEISNLREKTAVFKASSIANKAFLVGTSKEIRVLVEYMDDTDADSLKSAAEFLIDNLQDPAAIVLGSCPGEGKVSLVAAFTPSVVDLGVQAGKFIGSIAKLCGGGGGGRPNFAQAGGRKPENLLDALENARSELTRILSEKAS 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18871004 18878844 - MELO3C013645.2.1 Cme11g01236 341899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01236 815 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 582 625 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cme11g01236 815 Gene3D - 553 606 - -
Cme11g01236 815 PANTHER ALANYL-TRNA SYNTHETASE 1 805 - -
Cme11g01236 815 Gene3D - 698 806 - -
Cme11g01236 815 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 1 638 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Cme11g01236 815 SUPERFAMILY Translation proteins 376 481 IPR009000 -
Cme11g01236 815 Gene3D - 629 691 - -
Cme11g01236 815 Pfam tRNA synthetases class II (A) 1 484 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Cme11g01236 815 SUPERFAMILY ThrRS/AlaRS common domain 481 639 IPR018163 GO:0000166
Cme11g01236 815 PRINTS Alanyl-tRNA synthetase signature 133 146 IPR002318 GO:0000166|GO:0005737
Cme11g01236 815 PRINTS Alanyl-tRNA synthetase signature 184 200 IPR002318 GO:0000166|GO:0005737
Cme11g01236 815 PRINTS Alanyl-tRNA synthetase signature 208 221 IPR002318 GO:0000166|GO:0005737
Cme11g01236 815 PRINTS Alanyl-tRNA synthetase signature 106 117 IPR002318 GO:0000166|GO:0005737
Cme11g01236 815 Hamap Alanine--tRNA ligase [alaS]. 1 810 IPR023033 GO:0004813
Cme11g01236 815 Coils Coil 654 681 - -
Cme11g01236 815 Pfam DHHA1 domain 661 804 IPR003156 GO:0003676
Cme11g01236 815 Gene3D - 366 481 - -
Cme11g01236 815 Gene3D Bira Bifunctional Protein; Domain 2 1 149 IPR045864 -
Cme11g01236 815 SUPERFAMILY Class II aaRS and biotin synthetases 1 152 IPR045864 -
Cme11g01236 815 TIGRFAM alaS: alanine--tRNA ligase 1 789 IPR002318 GO:0000166|GO:0005737
Cme11g01236 815 Gene3D - 492 627 - -
Cme11g01236 815 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 153 382 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Cme11g01236 815 SMART tRNA_SAD_4 582 625 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cme11g01236 815 CDD AlaRS_core 1 148 - -
Cme11g01236 815 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 1 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01236 K01872 AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7] - csv:101206513 1523.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01579 Cme-Chr4:23100516 Cme11g01236 Cme-Chr11:18871004 1.92E-42 dispersed
Cme04g01581 Cme-Chr4:23109703 Cme11g01236 Cme-Chr11:18871004 4.38E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g254 . . . . . . . Bma12g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0645 . . . . . . . . Bhi10g01224 Tan05g1079 Cmetu11g1332 . Hepe08g0326 . . . . . . . . . . . . Cme11g01236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006559 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01236 Cme_Chr11 FPKM 1.327836 1.93949 1.291188 1.119361 10.788355 11.867782 12.293145 0.980957 0.909052 0.697293