Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01254 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATCCCTCTTACAAATATGTAAGGAAGCTTTCTGGAGCAGATGCTACTCAAGATCAAGAGCATCTTCCTATTCTTTCTGATCACCAACACTCCATAATGGCAGTTTCTGATGCATCTGACCGGAAAGAGGTTATCGTCAAGGTCGATGAGGCCGATGCTTCCAGTTTAAGAGCTACGGACTTGGTAAACGGAAGTGGCAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGCGAGGGTGGTGCTAGGACTACTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCTAAGCTTATCGGGCAGTTTCTTCACAAACAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCCGCTTTCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCCTTCGAGTCTATTTCAGAAATATCTGAAAACGATTCCATGCGAAGACGGCACAGAGACTCGCCACTCGATGAAGAACATAGAGGTCAGCAACCGCGGCAGTGTGATCGTCGTGCGCATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTATTGAGATGCTCATCCAATTCTTCCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTACTGGATCCACCCGAACACCAAGACCGGAGGTCAGGACGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTAATCTCAAAAGTCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCCAATCTAGGTGTTCTGACTCTGTTACAATGGGCGAGTTTGATTCTGATAATCGCAGCATTGGTTTGCACTTTAACAATTCGTTACTGGAGGAGAAAGAAACTGTGGAAGCTTGAAGTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGAAGACTTGTTTCTGGTTGGGGGATTAGGGTAATCGTCTTCTTCATTGAAAGAAACTTTCTACTTCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCGGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTAATAAGCACTTTGGTTTGGCTAGTAAAAACACTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGTCCTCCATTGATAGAGATTCAGAAGAATGAGGAAGAAGAAGAGAGGCTTGCTGAGGAAGTTATGAAGTTACAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCTACAGCTCAAAAGGGTGGGAGGGTGATAGGTAGTGGAGGGTTGCAAAAAAGTCCTCGTGGAAGAAGTGGCAAGTTATCTAGGACACTGTCGAAAAAGGGCGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGATTGATGAACATTGTTAGACATGGGACTCTTTCAACTTTGGATGAACAGATTAAAGATACAGCTCATGAGGACGAATCAACCACACAGATCAAGAGTGAATACGAGGCAAAAGTTGCTGCGAAGAAGATTTTCCTGAACGTGGCTAGAAATGGTTCTAAATATATCTACCTGGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGAAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCTCTAGCTTTGACATTGAACGATACCAAAACAGCAGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATTGCCACGAGCAAGTTTCTCCTATTCGTGACCTCTCAACTCGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGACGTCGGAGACCGATGTGAAATTGATGGTGTGCAGCTCCCTGAATTTCAGATGATTGTTGAAGAAATGAACATTTTGACTACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCAACAAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGGTGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATAGTAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTAAAGGATGTAGAAGAGTTAAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGCGAGAGGTGGACAAGGAGAGCTCTTTTGGTTGAAGAACTCGTTAAAATTTTCCAAGAGCTCGATTTGCAATACCGTCTCCTACCACTTGATATCAACGTTCGCTCCTTGCCTCCTGTGAACTCTACTAATTTTCCTCCCAGGGGCATTGTCAACTTGAATAATTTGAAAGAATTAGGTTGA 2823 42.12 MDFSLKSFKSHPSYKYVRKLSGADATQDQEHLPILSDHQHSIMAVSDASDRKEVIVKVDEADASSLRATDLVNGSGRIWRESSYDFWNDSDNRRNNGEGGARTTEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRDSPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCSSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLISKVLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLISTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVMKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTQIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQLPEFQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPPEKIAIMRQRIVSYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTNFPPRGIVNLNNLKELG 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19297825 19302192 + MELO3C013665.2.1 Cme11g01254 341917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01254 940 MobiDBLite consensus disorder prediction 250 274 - -
Cme11g01254 940 MobiDBLite consensus disorder prediction 181 219 - -
Cme11g01254 940 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 924 IPR016688 -
Cme11g01254 940 SUPERFAMILY Sm-like ribonucleoproteins 743 807 IPR010920 -
Cme11g01254 940 MobiDBLite consensus disorder prediction 252 269 - -
Cme11g01254 940 Coils Coil 482 505 - -
Cme11g01254 940 Gene3D - 753 807 IPR023408 -
Cme11g01254 940 PIRSF Memb_At2g17000 37 935 IPR016688 -
Cme11g01254 940 MobiDBLite consensus disorder prediction 522 549 - -
Cme11g01254 940 MobiDBLite consensus disorder prediction 89 120 - -
Cme11g01254 940 MobiDBLite consensus disorder prediction 150 221 - -
Cme11g01254 940 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 924 - -
Cme11g01254 940 Pfam Mechanosensitive ion channel 695 902 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01219 Cme-Chr1:15415621 Cme11g01254 Cme-Chr11:19297825 0 dispersed
Cme07g00186 Cme-Chr7:1260419 Cme11g01254 Cme-Chr11:19297825 1.23E-150 dispersed
Cme07g00187 Cme-Chr7:1268851 Cme11g01254 Cme-Chr11:19297825 1.70E-147 dispersed
Cme11g01254 Cme-Chr11:19297825 Cme02g00283 Cme-Chr2:2367651 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01254 K22048 - csv:101210264 1732.61