Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01254 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATCCCTCTTACAAATATGTAAGGAAGCTTTCTGGAGCAGATGCTACTCAAGATCAAGAGCATCTTCCTATTCTTTCTGATCACCAACACTCCATAATGGCAGTTTCTGATGCATCTGACCGGAAAGAGGTTATCGTCAAGGTCGATGAGGCCGATGCTTCCAGTTTAAGAGCTACGGACTTGGTAAACGGAAGTGGCAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGCGAGGGTGGTGCTAGGACTACTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCTAAGCTTATCGGGCAGTTTCTTCACAAACAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCCGCTTTCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCCTTCGAGTCTATTTCAGAAATATCTGAAAACGATTCCATGCGAAGACGGCACAGAGACTCGCCACTCGATGAAGAACATAGAGGTCAGCAACCGCGGCAGTGTGATCGTCGTGCGCATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTATTGAGATGCTCATCCAATTCTTCCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTACTGGATCCACCCGAACACCAAGACCGGAGGTCAGGACGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTAATCTCAAAAGTCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCCAATCTAGGTGTTCTGACTCTGTTACAATGGGCGAGTTTGATTCTGATAATCGCAGCATTGGTTTGCACTTTAACAATTCGTTACTGGAGGAGAAAGAAACTGTGGAAGCTTGAAGTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGAAGACTTGTTTCTGGTTGGGGGATTAGGGTAATCGTCTTCTTCATTGAAAGAAACTTTCTACTTCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCGGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTAATAAGCACTTTGGTTTGGCTAGTAAAAACACTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGTCCTCCATTGATAGAGATTCAGAAGAATGAGGAAGAAGAAGAGAGGCTTGCTGAGGAAGTTATGAAGTTACAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCTACAGCTCAAAAGGGTGGGAGGGTGATAGGTAGTGGAGGGTTGCAAAAAAGTCCTCGTGGAAGAAGTGGCAAGTTATCTAGGACACTGTCGAAAAAGGGCGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGATTGATGAACATTGTTAGACATGGGACTCTTTCAACTTTGGATGAACAGATTAAAGATACAGCTCATGAGGACGAATCAACCACACAGATCAAGAGTGAATACGAGGCAAAAGTTGCTGCGAAGAAGATTTTCCTGAACGTGGCTAGAAATGGTTCTAAATATATCTACCTGGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGAAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCTCTAGCTTTGACATTGAACGATACCAAAACAGCAGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATTGCCACGAGCAAGTTTCTCCTATTCGTGACCTCTCAACTCGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGACGTCGGAGACCGATGTGAAATTGATGGTGTGCAGCTCCCTGAATTTCAGATGATTGTTGAAGAAATGAACATTTTGACTACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCAACAAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGGTGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATAGTAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTAAAGGATGTAGAAGAGTTAAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGCGAGAGGTGGACAAGGAGAGCTCTTTTGGTTGAAGAACTCGTTAAAATTTTCCAAGAGCTCGATTTGCAATACCGTCTCCTACCACTTGATATCAACGTTCGCTCCTTGCCTCCTGTGAACTCTACTAATTTTCCTCCCAGGGGCATTGTCAACTTGAATAATTTGAAAGAATTAGGTTGA 2823 42.12 MDFSLKSFKSHPSYKYVRKLSGADATQDQEHLPILSDHQHSIMAVSDASDRKEVIVKVDEADASSLRATDLVNGSGRIWRESSYDFWNDSDNRRNNGEGGARTTEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRDSPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCSSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLISKVLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLISTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVMKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTQIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQLPEFQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGVEFCLHISTPPEKIAIMRQRIVSYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTNFPPRGIVNLNNLKELG 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19297825 19302192 + MELO3C013665.2.1 Cme11g01254 341917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01254 940 MobiDBLite consensus disorder prediction 250 274 - -
Cme11g01254 940 MobiDBLite consensus disorder prediction 181 219 - -
Cme11g01254 940 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 924 IPR016688 -
Cme11g01254 940 SUPERFAMILY Sm-like ribonucleoproteins 743 807 IPR010920 -
Cme11g01254 940 MobiDBLite consensus disorder prediction 252 269 - -
Cme11g01254 940 Coils Coil 482 505 - -
Cme11g01254 940 Gene3D - 753 807 IPR023408 -
Cme11g01254 940 PIRSF Memb_At2g17000 37 935 IPR016688 -
Cme11g01254 940 MobiDBLite consensus disorder prediction 522 549 - -
Cme11g01254 940 MobiDBLite consensus disorder prediction 89 120 - -
Cme11g01254 940 MobiDBLite consensus disorder prediction 150 221 - -
Cme11g01254 940 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 924 - -
Cme11g01254 940 Pfam Mechanosensitive ion channel 695 902 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01254 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1732.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01219 Cme-Chr1:15415621 Cme11g01254 Cme-Chr11:19297825 0 dispersed
Cme07g00186 Cme-Chr7:1260419 Cme11g01254 Cme-Chr11:19297825 1.23E-150 dispersed
Cme07g00187 Cme-Chr7:1268851 Cme11g01254 Cme-Chr11:19297825 1.70E-147 dispersed
Cme11g01254 Cme-Chr11:19297825 Cme02g00283 Cme-Chr2:2367651 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01254 Cme_Chr11 FPKM 1.838727 1.973795 4.205913 3.480083 5.531935 5.924119 5.073128 15.662823 17.600103 15.784997